Literature DB >> 26997547

Understanding hematopoiesis from a single-cell standpoint.

Konstantinos D Kokkaliaris1, Daniel Lucas2, Isabel Beerman3, David G Kent4, Leïla Perié5.   

Abstract

The cellular diversity of the hematopoietic system has been extensively studied, and a plethora of cell surface markers have been used to discriminate and prospectively purify different blood cell types. However, even within phenotypically identical fractions of hematopoietic stem and progenitor cells or lineage-restricted progenitors, significant functional heterogeneity is observed when single cells are analyzed. To address these challenges, researchers are now using techniques to follow single cells and their progeny to improve our understanding of the underlying functional heterogeneity. On November 19, 2015, Dr. David Kent and Dr. Leïla Perié, two emerging young group leaders, presented their recent efforts to dissect the functional properties of individual cells with a webinar series organized by the International Society for Experimental Hematology. Here, we provide a summary of the presented methods for cell labeling and clonal tracking and discuss how these different techniques have been employed to study hematopoiesis.
Copyright © 2016 ISEH - International Society for Experimental Hematology. All rights reserved.

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Year:  2016        PMID: 26997547      PMCID: PMC5849462          DOI: 10.1016/j.exphem.2016.03.003

Source DB:  PubMed          Journal:  Exp Hematol        ISSN: 0301-472X            Impact factor:   3.084


  27 in total

1.  Functionally distinct hematopoietic stem cells modulate hematopoietic lineage potential during aging by a mechanism of clonal expansion.

Authors:  Isabel Beerman; Deepta Bhattacharya; Sasan Zandi; Mikael Sigvardsson; Irving L Weissman; David Bryder; Derrick J Rossi
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-18       Impact factor: 11.205

Review 2.  Single-cell genome sequencing: current state of the science.

Authors:  Charles Gawad; Winston Koh; Stephen R Quake
Journal:  Nat Rev Genet       Date:  2016-01-25       Impact factor: 53.242

3.  The hematopoietic stem compartment consists of a limited number of discrete stem cell subsets.

Authors:  Hans B Sieburg; Rebecca H Cho; Brad Dykstra; Naoyuki Uchida; Connie J Eaves; Christa E Muller-Sieburg
Journal:  Blood       Date:  2005-11-15       Impact factor: 22.113

4.  SLAM family receptors distinguish hematopoietic stem and progenitor cells and reveal endothelial niches for stem cells.

Authors:  Mark J Kiel; Omer H Yilmaz; Toshihide Iwashita; Osman H Yilmaz; Cox Terhorst; Sean J Morrison
Journal:  Cell       Date:  2005-07-01       Impact factor: 41.582

Review 5.  Advances in tracking hematopoiesis at the single-cell level.

Authors:  Konstantinos D Kokkaliaris; Dirk Loeffler; Timm Schroeder
Journal:  Curr Opin Hematol       Date:  2012-07       Impact factor: 3.284

6.  Determining lineage pathways from cellular barcoding experiments.

Authors:  Leïla Perié; Philip D Hodgkin; Shalin H Naik; Ton N Schumacher; Rob J de Boer; Ken R Duffy
Journal:  Cell Rep       Date:  2014-02-06       Impact factor: 9.423

7.  Quantitative assessment of single-cell RNA-sequencing methods.

Authors:  Angela R Wu; Norma F Neff; Tomer Kalisky; Piero Dalerba; Barbara Treutlein; Michael E Rothenberg; Francis M Mburu; Gary L Mantalas; Sopheak Sim; Michael F Clarke; Stephen R Quake
Journal:  Nat Methods       Date:  2013-10-20       Impact factor: 28.547

8.  Combined Single-Cell Functional and Gene Expression Analysis Resolves Heterogeneity within Stem Cell Populations.

Authors:  Nicola K Wilson; David G Kent; Florian Buettner; Mona Shehata; Iain C Macaulay; Fernando J Calero-Nieto; Manuel Sánchez Castillo; Caroline A Oedekoven; Evangelia Diamanti; Reiner Schulte; Chris P Ponting; Thierry Voet; Carlos Caldas; John Stingl; Anthony R Green; Fabian J Theis; Berthold Göttgens
Journal:  Cell Stem Cell       Date:  2015-05-21       Impact factor: 24.633

9.  Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity.

Authors:  Christof Angermueller; Stephen J Clark; Heather J Lee; Iain C Macaulay; Mabel J Teng; Tim Xiaoming Hu; Felix Krueger; Sebastien Smallwood; Chris P Ponting; Thierry Voet; Gavin Kelsey; Oliver Stegle; Wolf Reik
Journal:  Nat Methods       Date:  2016-01-11       Impact factor: 28.547

10.  Deep imaging of bone marrow shows non-dividing stem cells are mainly perisinusoidal.

Authors:  Melih Acar; Kiranmai S Kocherlakota; Malea M Murphy; James G Peyer; Hideyuki Oguro; Christopher N Inra; Christabel Jaiyeola; Zhiyu Zhao; Katherine Luby-Phelps; Sean J Morrison
Journal:  Nature       Date:  2015-09-23       Impact factor: 49.962

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  2 in total

1.  DNA barcoded competitive clone-initiating cell analysis reveals novel features of metastatic growth in a cancer xenograft model.

Authors:  Syed Mohammed Musheer Aalam; Xiaojia Tang; Jianning Song; Upasana Ray; Stephen J Russell; S John Weroha; Jamie Bakkum-Gamez; Viji Shridhar; Mark E Sherman; Connie J Eaves; David J H F Knapp; Krishna R Kalari; Nagarajan Kannan
Journal:  NAR Cancer       Date:  2022-07-22

2.  Clonal and Quantitative In Vivo Assessment of Hematopoietic Stem Cell Differentiation Reveals Strong Erythroid Potential of Multipotent Cells.

Authors:  Scott W Boyer; Smrithi Rajendiran; Anna E Beaudin; Stephanie Smith-Berdan; Praveen K Muthuswamy; Jessica Perez-Cunningham; Eric W Martin; Christa Cheung; Herman Tsang; Mark Landon; E Camilla Forsberg
Journal:  Stem Cell Reports       Date:  2019-03-21       Impact factor: 7.765

  2 in total

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