Literature DB >> 26996960

Ring Separation Highlights the Protein-Folding Mechanism Used by the Phage EL-Encoded Chaperonin.

Sudheer K Molugu1, Zacariah L Hildenbrand1, David Gene Morgan2, Michael B Sherman3, Lilin He4, Costa Georgopoulos5, Natalia V Sernova6, Lidia P Kurochkina7, Vadim V Mesyanzhinov7, Konstantin A Miroshnikov7, Ricardo A Bernal8.   

Abstract

Chaperonins are ubiquitous, ATP-dependent protein-folding molecular machines that are essential for all forms of life. Bacteriophage φEL encodes its own chaperonin to presumably fold exceedingly large viral proteins via profoundly different nucleotide-binding conformations. Our structural investigations indicate that ATP likely binds to both rings simultaneously and that a misfolded substrate acts as the trigger for ATP hydrolysis. More importantly, the φEL complex dissociates into two single rings resulting from an evolutionarily altered residue in the highly conserved ATP-binding pocket. Conformational changes also more than double the volume of the single-ring internal chamber such that larger viral proteins are accommodated. This is illustrated by the fact that φEL is capable of folding β-galactosidase, a 116-kDa protein. Collectively, the architecture and protein-folding mechanism of the φEL chaperonin are significantly different from those observed in group I and II chaperonins.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 26996960      PMCID: PMC4823152          DOI: 10.1016/j.str.2016.02.006

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  40 in total

1.  EMAN: semiautomated software for high-resolution single-particle reconstructions.

Authors:  S J Ludtke; P R Baldwin; W Chiu
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

2.  Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.

Authors:  J Castresana
Journal:  Mol Biol Evol       Date:  2000-04       Impact factor: 16.240

3.  ATP-bound states of GroEL captured by cryo-electron microscopy.

Authors:  N A Ranson; G W Farr; A M Roseman; B Gowen; W A Fenton; A L Horwich; H R Saibil
Journal:  Cell       Date:  2001-12-28       Impact factor: 41.582

4.  Accurate determination of local defocus and specimen tilt in electron microscopy.

Authors:  Joseph A Mindell; Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2003-06       Impact factor: 2.867

5.  Essential function of the built-in lid in the allosteric regulation of eukaryotic and archaeal chaperonins.

Authors:  Stefanie Reissmann; Charles Parnot; Christopher R Booth; Wah Chiu; Judith Frydman
Journal:  Nat Struct Mol Biol       Date:  2007-04-29       Impact factor: 15.369

6.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Authors:  Koichiro Tamura; Daniel Peterson; Nicholas Peterson; Glen Stecher; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

Review 7.  Molecular chaperones in protein folding and proteostasis.

Authors:  F Ulrich Hartl; Andreas Bracher; Manajit Hayer-Hartl
Journal:  Nature       Date:  2011-07-20       Impact factor: 49.962

8.  Influence of the GroE molecular chaperone machine on the in vitro refolding of Escherichia coli beta-galactosidase.

Authors:  A Ayling; F Baneyx
Journal:  Protein Sci       Date:  1996-03       Impact factor: 6.725

9.  Identification of important amino acid residues that modulate binding of Escherichia coli GroEL to its various cochaperones.

Authors:  G Klein; C Georgopoulos
Journal:  Genetics       Date:  2001-06       Impact factor: 4.562

10.  Symmetry-free cryo-EM structures of the chaperonin TRiC along its ATPase-driven conformational cycle.

Authors:  Yao Cong; Gunnar F Schröder; Anne S Meyer; Joanita Jakana; Boxue Ma; Matthew T Dougherty; Michael F Schmid; Stefanie Reissmann; Michael Levitt; Steven L Ludtke; Judith Frydman; Wah Chiu
Journal:  EMBO J       Date:  2011-11-01       Impact factor: 11.598

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  5 in total

Review 1.  Dynamic Complexes in the Chaperonin-Mediated Protein Folding Cycle.

Authors:  Celeste Weiss; Fady Jebara; Shahar Nisemblat; Abdussalam Azem
Journal:  Front Mol Biosci       Date:  2016-12-08

2.  The human mitochondrial Hsp60 in the APO conformation forms a stable tetradecameric complex.

Authors:  Adrian S Enriquez; Humberto M Rojo; Jay M Bhatt; Sudheer K Molugu; Zacariah L Hildenbrand; Ricardo A Bernal
Journal:  Cell Cycle       Date:  2017-06-08       Impact factor: 4.534

Review 3.  Proteostasis in Viral Infection: Unfolding the Complex Virus-Chaperone Interplay.

Authors:  Ranen Aviner; Judith Frydman
Journal:  Cold Spring Harb Perspect Biol       Date:  2020-03-02       Impact factor: 10.005

4.  Single-Ring Intermediates Are Essential for Some Chaperonins.

Authors:  Jay M Bhatt; Adrian S Enriquez; Jinliang Wang; Humberto M Rojo; Sudheer K Molugu; Zacariah L Hildenbrand; Ricardo A Bernal
Journal:  Front Mol Biosci       Date:  2018-04-27

5.  Structure and conformational cycle of a bacteriophage-encoded chaperonin.

Authors:  Andreas Bracher; Simanta S Paul; Huping Wang; Nadine Wischnewski; F Ulrich Hartl; Manajit Hayer-Hartl
Journal:  PLoS One       Date:  2020-04-27       Impact factor: 3.240

  5 in total

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