Literature DB >> 26996654

Ecological and evolutionary significance of novel protist lineages.

Javier Del Campo1, Laure Guillou2, Elisabeth Hehenberger3, Ramiro Logares4, Purificación López-García5, Ramon Massana4.   

Abstract

Environmental molecular surveys targeting protist diversity have unveiled novel and uncultured lineages in a variety of ecosystems, ranging from completely new high-rank lineages, to new taxa moderately related to previously described organisms. The ecological roles of some of these novel taxa have been studied, showing that in certain habitats they may be responsible for critical environmental processes. Moreover, from an evolutionary perspective they still need to be included in a more accurate and wider understanding of the eukaryotic tree of life. These seminal discoveries promoted the development and use of a wide range of more in-depth culture-independent approaches to access this diversity, from metabarcoding and metagenomics to single cell genomics and FISH. Nonetheless, culturing using classical or innovative approaches is also essential to better characterize this new diversity. Ecologists and evolutionary biologists now face the challenge of apprehending the significance of this new diversity within the eukaryotic tree of life.
Copyright © 2016 Elsevier GmbH. All rights reserved.

Entities:  

Keywords:  Culturing; FISH; Metabarcoding; Metagenomics; Novel lineages; Single cell genomics

Mesh:

Year:  2016        PMID: 26996654      PMCID: PMC5242370          DOI: 10.1016/j.ejop.2016.02.002

Source DB:  PubMed          Journal:  Eur J Protistol        ISSN: 0932-4739            Impact factor:   3.020


  78 in total

1.  Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity.

Authors:  S Y Moon-van der Staay; R De Wachter; D Vaulot
Journal:  Nature       Date:  2001-02-01       Impact factor: 49.962

2.  Microbiology: eukaryotic diversity in Spain's River of Fire.

Authors:  Linda A Amaral Zettler; Felipe Gómez; Erik Zettler; Brendan G Keenan; Ricardo Amils; Mitchell L Sogin
Journal:  Nature       Date:  2002-05-09       Impact factor: 49.962

3.  Individual genome assembly from complex community short-read metagenomic datasets.

Authors:  Chengwei Luo; Despina Tsementzi; Nikos C Kyrpides; Konstantinos T Konstantinidis
Journal:  ISME J       Date:  2011-10-27       Impact factor: 10.302

4.  A resurgence in field research is essential to better understand the diversity, ecology, and evolution of microbial eukaryotes.

Authors:  Thierry J Heger; Virginia P Edgcomb; Eunsoo Kim; Julius Lukeš; Brian S Leander; Naoji Yubuki
Journal:  J Eukaryot Microbiol       Date:  2014-02-25       Impact factor: 3.346

5.  Single-cell transcriptomics for microbial eukaryotes.

Authors:  Martin Kolisko; Vittorio Boscaro; Fabien Burki; Denis H Lynn; Patrick J Keeling
Journal:  Curr Biol       Date:  2014-11-17       Impact factor: 10.834

6.  Auxotrophy and intrapopulation complementary in the 'interactome' of a cultivated freshwater model community.

Authors:  Sarahi L Garcia; Moritz Buck; Katherine D McMahon; Hans-Peter Grossart; Alexander Eiler; Falk Warnecke
Journal:  Mol Ecol       Date:  2015-08-08       Impact factor: 6.185

7.  Metatranscriptomic census of active protists in soils.

Authors:  Stefan Geisen; Alexander T Tveit; Ian M Clark; Andreas Richter; Mette M Svenning; Michael Bonkowski; Tim Urich
Journal:  ISME J       Date:  2015-03-27       Impact factor: 10.302

8.  Microfluidic single-cell whole-transcriptome sequencing.

Authors:  Aaron M Streets; Xiannian Zhang; Chen Cao; Yuhong Pang; Xinglong Wu; Liang Xiong; Lu Yang; Yusi Fu; Liang Zhao; Fuchou Tang; Yanyi Huang
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-29       Impact factor: 11.205

9.  Complex archaea that bridge the gap between prokaryotes and eukaryotes.

Authors:  Anja Spang; Jimmy H Saw; Steffen L Jørgensen; Katarzyna Zaremba-Niedzwiedzka; Joran Martijn; Anders E Lind; Roel van Eijk; Christa Schleper; Lionel Guy; Thijs J G Ettema
Journal:  Nature       Date:  2015-05-06       Impact factor: 49.962

10.  Palpitomonas bilix represents a basal cryptist lineage: insight into the character evolution in Cryptista.

Authors:  Akinori Yabuki; Ryoma Kamikawa; Sohta A Ishikawa; Martin Kolisko; Eunsoo Kim; Akifumi S Tanabe; Keitaro Kume; Ken-ichiro Ishida; Yuji Inagki
Journal:  Sci Rep       Date:  2014-04-10       Impact factor: 4.379

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  1 in total

Review 1.  The origin of animals: an ancestral reconstruction of the unicellular-to-multicellular transition.

Authors:  Núria Ros-Rocher; Alberto Pérez-Posada; Michelle M Leger; Iñaki Ruiz-Trillo
Journal:  Open Biol       Date:  2021-02-24       Impact factor: 6.411

  1 in total

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