Literature DB >> 26995495

Molecular characterization of Sp110 gene in pigs.

Li-Zu Li1, Qiu-Shi Wang1, Li-Xin Han1, Jin-Kui Wang1, Si-Yu Shao1, Liang Wang2, Di Liu3, Xiu-Qin Yang4.   

Abstract

Speckled 110 kDa (Sp110) plays an important role in infectious diseases, as revealed by studies in humans. However, little is known regarding porcine Sp110. To elucidate its potential role in porcine resistance to viral diseases, here, the complete coding sequence of porcine Sp110 gene and its 26 alternatively spliced isoforms were isolated using reverse transcription (RT)-polymerase chain reaction (PCR), and another seven splicing patterns were obtained using a minigene construct. Subcellular distribution of 11 representative isoforms was characterized in PK-15 cells transiently transfected with their respective GFP fusion constructs, and only isoforms (R and V) bearing all functional domains were localized in nucleus, indicating all the other isoforms lose normal functions of Sp110 owing to alternative splicing. Real-time quantitative PCR and competitive RT-PCR showed that both isoforms R and V had similar tissue expression profile, half-life and response to poly(I:C), a synthetic analog of viral double-stranded RNA, while the longer one (isoform R) was transcribed at a higher level. The results indicated that porcine Sp110 has a role in viral infection and that isoform R is the dominant active form. Overall the data provide potential resource for molecular breeding of pig resistant to diseases and contributes to breeding pigs resistant to viral infection.

Entities:  

Keywords:  Alternative splicing; Expression; Pig; Sp110; Subcellular localization

Mesh:

Substances:

Year:  2016        PMID: 26995495     DOI: 10.1007/s00438-016-1189-9

Source DB:  PubMed          Journal:  Mol Genet Genomics        ISSN: 1617-4623            Impact factor:   3.291


  27 in total

1.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.

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Journal:  Methods       Date:  2001-12       Impact factor: 3.608

Review 2.  Nonsense-mediated mRNA decay: splicing, translation and mRNP dynamics.

Authors:  Lynne E Maquat
Journal:  Nat Rev Mol Cell Biol       Date:  2004-02       Impact factor: 94.444

3.  Ipr1 gene mediates innate immunity to tuberculosis.

Authors:  Hui Pan; Bo-Shiun Yan; Mauricio Rojas; Yuriy V Shebzukhov; Hongwei Zhou; Lester Kobzik; Darren E Higgins; Mark J Daly; Barry R Bloom; Igor Kramnik
Journal:  Nature       Date:  2005-04-07       Impact factor: 49.962

Review 4.  A rule for termination-codon position within intron-containing genes: when nonsense affects RNA abundance.

Authors:  E Nagy; L E Maquat
Journal:  Trends Biochem Sci       Date:  1998-06       Impact factor: 13.807

5.  Evaluation of PCR-generated chimeras, mutations, and heteroduplexes with 16S rRNA gene-based cloning.

Authors:  X Qiu; L Wu; H Huang; P E McDonel; A V Palumbo; J M Tiedje; J Zhou
Journal:  Appl Environ Microbiol       Date:  2001-02       Impact factor: 4.792

6.  The nuclear dot protein sp100, characterization of domains necessary for dimerization, subcellular localization, and modification by small ubiquitin-like modifiers.

Authors:  T Sternsdorf; K Jensen; B Reich; H Will
Journal:  J Biol Chem       Date:  1999-04-30       Impact factor: 5.157

7.  Modulation of retinoid signaling by a cytoplasmic viral protein via sequestration of Sp110b, a potent transcriptional corepressor of retinoic acid receptor, from the nucleus.

Authors:  Koichi Watashi; Makoto Hijikata; Ayako Tagawa; Takahiro Doi; Hiroyuki Marusawa; Kunitada Shimotohno
Journal:  Mol Cell Biol       Date:  2003-11       Impact factor: 4.272

8.  SR proteins and the nonsense-mediated decay mechanism are involved in human GLB1 gene alternative splicing.

Authors:  Raül Santamaria; Lluïsa Vilageliu; Daniel Grinberg
Journal:  BMC Res Notes       Date:  2008-12-29

9.  Sp110 transcription is induced and required by Anaplasma phagocytophilum for infection of human promyelocytic cells.

Authors:  José de la Fuente; Raúl Manzano-Roman; Edmour F Blouin; Victoria Naranjo; Katherine M Kocan
Journal:  BMC Infect Dis       Date:  2007-09-20       Impact factor: 3.090

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Journal:  J Cell Sci       Date:  1999-03       Impact factor: 5.285

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  1 in total

1.  The Arginine/Lysine-Rich Element within the DNA-Binding Domain Is Essential for Nuclear Localization and Function of the Intracellular Pathogen Resistance 1.

Authors:  Kezhen Yao; Yongyan Wu; Qi Chen; Zihan Zhang; Xin Chen; Yong Zhang
Journal:  PLoS One       Date:  2016-09-13       Impact factor: 3.240

  1 in total

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