Literature DB >> 26994102

New integrative modules for multicolor-protein labeling and live-cell imaging in Saccharomyces cerevisiae.

Ivana Malcova1, Marian Farkasovsky2, Lenka Senohrabkova1, Pavla Vasicova1, Jiri Hasek3.   

Abstract

Live-imaging analysis is performed in many laboratories all over the world. Various tools have been developed to enable protein labeling either in plasmid or genomic context in live yeast cells. Here, we introduce a set of nine integrative modules for the C-terminal gene tagging that combines three fluorescent proteins (FPs)-ymTagBFP, mCherry and yTagRFP-T with three dominant selection markers: geneticin, nourseothricin and hygromycin. In addition, the construction of two episomal modules for Saccharomyces cerevisiae with photostable yTagRFP-T is also referred to. Our cassettes with orange, red and blue FPs can be combined with other fluorescent probes like green fluorescent protein to prepare double- or triple-labeled strains for multicolor live-cell imaging. Primers for PCR amplification of the cassettes were designed in such a way as to be fully compatible with the existing PCR toolbox representing over 50 various integrative modules and also with deletion cassettes either for single or repeated usage to enable a cost-effective and an easy exchange of tags. New modules can also be used for biochemical analysis since antibodies are available for all three fluorescent probes. © FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  Integrative cassettes; dominant selectable markers; episomal tagging; fluorescent proteins; live-cell imaging; yeast

Mesh:

Substances:

Year:  2016        PMID: 26994102     DOI: 10.1093/femsyr/fow027

Source DB:  PubMed          Journal:  FEMS Yeast Res        ISSN: 1567-1356            Impact factor:   2.796


  10 in total

1.  An aggregation-prone mutant of eIF3a forms reversible assemblies escaping spatial control in exponentially growing yeast cells.

Authors:  Lenka Senohrabkova; Ivana Malcova; Jiri Hasek
Journal:  Curr Genet       Date:  2019-02-04       Impact factor: 3.886

2.  Assessment of fluorescent protein candidates for multi-color flow cytometry analysis of Saccharomyces cerevisiae.

Authors:  Raquel Perruca-Foncillas; Johan Davidsson; Magnus Carlquist; Marie F Gorwa-Grauslund
Journal:  Biotechnol Rep (Amst)       Date:  2022-04-26

3.  Oxidative stress triggers aggregation of GFP-tagged Hsp31p, the budding yeast environmental stress response chaperone, and glyoxalase III.

Authors:  Urszula Natkańska; Adrianna Skoneczna; Marek Skoneczny
Journal:  Cell Stress Chaperones       Date:  2017-12-20       Impact factor: 3.667

4.  DNA double-strand breaks in telophase lead to coalescence between segregated sister chromatid loci.

Authors:  Jessel Ayra-Plasencia; Félix Machín
Journal:  Nat Commun       Date:  2019-06-28       Impact factor: 14.919

5.  Analysis of the roles of phosphatidylinositol-4,5-bisphosphate and individual subunits in assembly, localization, and function of Saccharomyces cerevisiae target of rapamycin complex 2.

Authors:  Maria Nieves Martinez Marshall; Anita Emmerstorfer-Augustin; Kristin L Leskoske; Lydia H Zhang; Biyun Li; Jeremy Thorner
Journal:  Mol Biol Cell       Date:  2019-04-10       Impact factor: 3.612

6.  Design of a New [PSI +]-No-More Mutation in SUP35 With Strong Inhibitory Effect on the [PSI +] Prion Propagation.

Authors:  Lavrentii G Danilov; Andrew G Matveenko; Varvara E Ryzhkova; Mikhail V Belousov; Olga I Poleshchuk; Daria V Likholetova; Petr A Sokolov; Nina A Kasyanenko; Andrey V Kajava; Galina A Zhouravleva; Stanislav A Bondarev
Journal:  Front Mol Neurosci       Date:  2019-11-19       Impact factor: 5.639

7.  DNA variants affecting the expression of numerous genes in trans have diverse mechanisms of action and evolutionary histories.

Authors:  Sheila Lutz; Christian Brion; Margaret Kliebhan; Frank W Albert
Journal:  PLoS Genet       Date:  2019-11-18       Impact factor: 5.917

8.  Activity of a ubiquitin ligase adaptor is regulated by disordered insertions in its arrestin domain.

Authors:  Matthew G Baile; Evan L Guiney; Ethan J Sanford; Jason A MacGurn; Marcus B Smolka; Scott D Emr
Journal:  Mol Biol Cell       Date:  2019-10-16       Impact factor: 4.138

9.  CRISPR-UnLOCK: Multipurpose Cas9-Based Strategies for Conversion of Yeast Libraries and Strains.

Authors:  Emily Roggenkamp; Rachael M Giersch; Emily Wedeman; Muriel Eaton; Emily Turnquist; Madison N Schrock; Linah Alkotami; Thitikan Jirakittisonthon; Samantha E Schluter-Pascua; Gareth H Bayne; Cory Wasko; Megan Halloran; Gregory C Finnigan
Journal:  Front Microbiol       Date:  2017-09-20       Impact factor: 5.640

10.  eIF3a Destabilization and TDP-43 Alter Dynamics of Heat-Induced Stress Granules.

Authors:  Ivana Malcova; Lenka Senohrabkova; Lenka Novakova; Jiri Hasek
Journal:  Int J Mol Sci       Date:  2021-05-13       Impact factor: 5.923

  10 in total

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