Literature DB >> 26990779

Quantitative neuroanatomy for connectomics in Drosophila.

Casey M Schneider-Mizell1, Stephan Gerhard1,2,3, Mark Longair2,3, Tom Kazimiers1, Feng Li1, Maarten F Zwart1, Andrew Champion1, Frank M Midgley1, Richard D Fetter1, Stephan Saalfeld1, Albert Cardona1.   

Abstract

Neuronal circuit mapping using electron microscopy demands laborious proofreading or reconciliation of multiple independent reconstructions. Here, we describe new methods to apply quantitative arbor and network context to iteratively proofread and reconstruct circuits and create anatomically enriched wiring diagrams. We measured the morphological underpinnings of connectivity in new and existing reconstructions of Drosophila sensorimotor (larva) and visual (adult) systems. Synaptic inputs were preferentially located on numerous small, microtubule-free 'twigs' which branch off a single microtubule-containing 'backbone'. Omission of individual twigs accounted for 96% of errors. However, the synapses of highly connected neurons were distributed across multiple twigs. Thus, the robustness of a strong connection to detailed twig anatomy was associated with robustness to reconstruction error. By comparing iterative reconstruction to the consensus of multiple reconstructions, we show that our method overcomes the need for redundant effort through the discovery and application of relationships between cellular neuroanatomy and synaptic connectivity.

Entities:  

Keywords:  <i>d. melanogaster</i>; connectomics; neuroanatomy; neuroscience; proprioception

Mesh:

Year:  2016        PMID: 26990779      PMCID: PMC4811773          DOI: 10.7554/eLife.12059

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  71 in total

Review 1.  Semi-automated reconstruction of neural circuits using electron microscopy.

Authors:  Dmitri B Chklovskii; Shiv Vitaladevuni; Louis K Scheffer
Journal:  Curr Opin Neurobiol       Date:  2010-09-15       Impact factor: 6.627

2.  Role of intrinsic properties in Drosophila motoneuron recruitment during fictive crawling.

Authors:  Jennifer E Schaefer; Jason W Worrell; Richard B Levine
Journal:  J Neurophysiol       Date:  2010-06-23       Impact factor: 2.714

3.  Genetically encoded dendritic marker sheds light on neuronal connectivity in Drosophila.

Authors:  Laura J J Nicolaï; Ariane Ramaekers; Tim Raemaekers; Andrzej Drozdzecki; Alex S Mauss; Jiekun Yan; Matthias Landgraf; Wim Annaert; Bassem A Hassan
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-08       Impact factor: 11.205

4.  Identifying neuronal lineages of Drosophila by sequence analysis of axon tracts.

Authors:  Albert Cardona; Stephan Saalfeld; Ignacio Arganda; Wayne Pereanu; Johannes Schindelin; Volker Hartenstein
Journal:  J Neurosci       Date:  2010-06-02       Impact factor: 6.167

5.  The micro-architecture of mitochondria at active zones: electron tomography reveals novel anchoring scaffolds and cristae structured for high-rate metabolism.

Authors:  Guy A Perkins; Jonathan Tjong; Joshua M Brown; Patrick H Poquiz; Raymond T Scott; Douglas R Kolson; Mark H Ellisman; George A Spirou
Journal:  J Neurosci       Date:  2010-01-20       Impact factor: 6.167

6.  Synaptic organization in the adult Drosophila mushroom body calyx.

Authors:  Florian Leiss; Claudia Groh; Nancy J Butcher; Ian A Meinertzhagen; Gaia Tavosanis
Journal:  J Comp Neurol       Date:  2009-12-20       Impact factor: 3.215

Review 7.  Machines that learn to segment images: a crucial technology for connectomics.

Authors:  Viren Jain; H Sebastian Seung; Srinivas C Turaga
Journal:  Curr Opin Neurobiol       Date:  2010-10       Impact factor: 6.627

8.  Structural properties of the Caenorhabditis elegans neuronal network.

Authors:  Lav R Varshney; Beth L Chen; Eric Paniagua; David H Hall; Dmitri B Chklovskii
Journal:  PLoS Comput Biol       Date:  2011-02-03       Impact factor: 4.475

9.  Positional cues in the Drosophila nerve cord: semaphorins pattern the dorso-ventral axis.

Authors:  Marta Zlatic; Feng Li; Maura Strigini; Wesley Grueber; Michael Bate
Journal:  PLoS Biol       Date:  2009-06-23       Impact factor: 8.029

10.  CATMAID: collaborative annotation toolkit for massive amounts of image data.

Authors:  Stephan Saalfeld; Albert Cardona; Volker Hartenstein; Pavel Tomancak
Journal:  Bioinformatics       Date:  2009-04-17       Impact factor: 6.937

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  103 in total

1.  Patterns and distribution of presynaptic and postsynaptic elements within serial electron microscopic reconstructions of neuronal arbors from the medicinal leech Hirudo verbana.

Authors:  Jason E Pipkin; Eric A Bushong; Mark H Ellisman; William B Kristan
Journal:  J Comp Neurol       Date:  2016-12-15       Impact factor: 3.215

2.  The Wiring Logic of an Identified Serotonergic Neuron That Spans Sensory Networks.

Authors:  Kaylynn E Coates; Steven A Calle-Schuler; Levi M Helmick; Victoria L Knotts; Brennah N Martik; Farzaan Salman; Lauren T Warner; Sophia V Valla; Davi D Bock; Andrew M Dacks
Journal:  J Neurosci       Date:  2020-07-08       Impact factor: 6.167

Review 3.  Establishment and Maintenance of Neural Circuit Architecture.

Authors:  Emily L Heckman; Chris Q Doe
Journal:  J Neurosci       Date:  2021-02-10       Impact factor: 6.167

Review 4.  Mapping brain structure and function: cellular resolution, global perspective.

Authors:  Günther K H Zupanc
Journal:  J Comp Physiol A Neuroethol Sens Neural Behav Physiol       Date:  2017-03-24       Impact factor: 1.836

5.  Gap Junction-Mediated Signaling from Motor Neurons Regulates Motor Generation in the Central Circuits of Larval Drosophila.

Authors:  Teruyuki Matsunaga; Hiroshi Kohsaka; Akinao Nose
Journal:  J Neurosci       Date:  2017-01-23       Impact factor: 6.167

6.  Sex differences in Drosophila behavior: Qualitative and Quantitative Dimorphism.

Authors:  Kenta Asahina
Journal:  Curr Opin Physiol       Date:  2018-04-17

7.  Neurogenetic dissection of the Drosophila lateral horn reveals major outputs, diverse behavioural functions, and interactions with the mushroom body.

Authors:  Gerald M Rubin; Gregory Sxe Jefferis; Michael-John Dolan; Shahar Frechter; Alexander Shakeel Bates; Chuntao Dan; Paavo Huoviala; Ruairí Jv Roberts; Philipp Schlegel; Serene Dhawan; Remy Tabano; Heather Dionne; Christina Christoforou; Kari Close; Ben Sutcliffe; Bianca Giuliani; Feng Li; Marta Costa; Gudrun Ihrke; Geoffrey Wilson Meissner; Davi D Bock; Yoshinori Aso
Journal:  Elife       Date:  2019-05-21       Impact factor: 8.140

8.  Wiring patterns from auditory sensory neurons to the escape and song-relay pathways in fruit flies.

Authors:  Hyunsoo Kim; Mihoko Horigome; Yuki Ishikawa; Feng Li; J Scott Lauritzen; Gwyneth Card; Davi D Bock; Azusa Kamikouchi
Journal:  J Comp Neurol       Date:  2020-02-19       Impact factor: 3.215

9.  The natverse, a versatile toolbox for combining and analysing neuroanatomical data.

Authors:  Alexander Shakeel Bates; James D Manton; Sridhar R Jagannathan; Marta Costa; Philipp Schlegel; Torsten Rohlfing; Gregory Sxe Jefferis
Journal:  Elife       Date:  2020-04-14       Impact factor: 8.140

10.  Spatial readout of visual looming in the central brain of Drosophila.

Authors:  Aljoscha Nern; Arthur Zhao; Mai M Morimoto; Edward M Rogers; Allan M Wong; Mathew D Isaacson; Davi D Bock; Gerald M Rubin; Michael B Reiser
Journal:  Elife       Date:  2020-11-18       Impact factor: 8.140

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