| Literature DB >> 26990771 |
Bum Sik Chin1,2, Antoine Chaillon2, Sanjay R Mehta2, Joel O Wertheim2, Gayeon Kim1, Hyoung-Shik Shin1, Davey M Smith2,3.
Abstract
To evaluate if HIV transmission networks could be elucidated from data collected in a short time frame, 131 HIV-1 pol sequences were analyzed which were generated from treatment-naïve Korean individuals who were sequentially identified over 1 year. A transmission linkage was inferred when there was a genetic distance <1.5% and a total of 16 clusters, involving 39/131 (29.8%), were identified. Younger age and heterosexual exposure were independently related with clustering in the inferred network, which demonstrated that molecular epidemiology with currently generated data (i.e., drug resistance genotypes) can be used to identify local transmission networks, even over a short timeframe. J. Med. Virol. 88:1832-1835, 2016.Entities:
Keywords: cluster analysis; human immunodeficiency virus; molecular epidemiology; phylogeny
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Year: 2016 PMID: 26990771 PMCID: PMC4969179 DOI: 10.1002/jmv.24523
Source DB: PubMed Journal: J Med Virol ISSN: 0146-6615 Impact factor: 2.327