| Literature DB >> 26988239 |
Daniela Giardino1, Rita Mingarelli2, Tiziana Lauretti2, Antonio Amoroso3, Lidia Larizza4,5, Bruno Dallapiccola2.
Abstract
BACKGROUND: The aim of this study was to collect information about 2011 genetic activities in Italy, with the purpose of providing guidance to the national health systems in order to improve genetic services.Entities:
Mesh:
Year: 2016 PMID: 26988239 PMCID: PMC4797350 DOI: 10.1186/s12913-016-1340-7
Source DB: PubMed Journal: BMC Health Serv Res ISSN: 1472-6963 Impact factor: 2.655
Geographical distribution of the censused structures
| Area | Medical | % | Genetic services | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| genetic centers | CL | % | MGL | % | IGL | % | CGS | % | Total | ||
| Northern | 142 | 53 | 70 | 46 | 101 | 51 | 8 | 38 | 68 | 47 | 247 |
| Central | 54 | 20 | 32 | 21 | 45 | 23 | 7 | 33 | 34 | 23 | 118 |
| Southern | 45 | 17 | 31 | 20 | 34 | 17 | 5 | 24 | 30 | 21 | 100 |
| Islander | 27 | 10 | 20 | 13 | 18 | 9 | 1 | 5 | 13 | 9 | 52 |
| Total | 268 | 153 | 198 | 21 | 145 | 517 | |||||
CL Cytogenetic Laboratories, MGL Molecular Genetic Laboratories, IGL Immunogenetic Laboratories, CGS Clinical Genetic Services, %, % of structures located in a specific geographic area out of the total of the censused structures
Fig. 1Distribution by affiliation of the 517 services performing genetic activities during 2011 in Italy
Fig. 2Number of censused structures in the SIGU surveys of 2004, 2007 and 2011
Fig. 3Professional qualifications of the staff employed in the Italian genetic services
Quality assurance by accreditation or certification procedures
| Geographical area | Accredited by institutional bodies | Also ISO 9001 certified | Also ISO 15189 accredited | Also ISO 17025 accredited | Also JCI accredited | Also EFI accredited | Also CAC accredited | Also SIGU Accredited |
|---|---|---|---|---|---|---|---|---|
| Northern | 109 | 83 | 13 | 0 | 7 | 4 | 1 | 9 |
| Central | 42 | 31 | 7 | 1 | 1 | 2 | 0 | 3 |
| Southern | 28 | 22 | 0 | 1 | 2 | 0 | 0 | 0 |
| Islander | 19 | 17 | 0 | 0 | 0 | 1 | 0 | 1 |
| Totala | 198 | 153 | 20 | 2 | 10 | 7 | 1 | 13 |
| %b | 73,8 | 57,1 | 7,4 | 0,7 | 3,7 | 2,6 | 0,3 | 4,8 |
aTotal number of accredited/certified structures
b% of accredited-certified centers out of the total of the censused centers
Constitutional and oncological cytogenetic analyses surveyed by SIGU since 2000
| Year | |||||
|---|---|---|---|---|---|
| Type of tissue/analysis | 2000 | 2002 | 2004 | 2007 | 2011 |
|
| Number | ||||
| Amniotic Fluid | 77395 | 95729 | 101011 | 101750 | 97320 |
| Chorionic villi | 9169 | 15159 | 18357 | 25691 | 25520 |
| Fetal blood | 784 | 808 | 870 | 478 | 383 |
| Spontaneous abortions | 2874 | 5231 | 6483 | 8415 | 5856 |
| Prenatal FISH | 8643 | 20032 | 26331 | 2891a | |
| Rapid FISH for aneuploidies | 4288 | ||||
| Microarray (CGH and SNPs) | 393 | 1862 | |||
|
| 90222 | 125570 | 146753 | 163058 | 138120 |
|
| |||||
| Peripheral blood | 65148 | 81153 | 8,478 | 69841 | |
| Fibroblasts | 493 | 1258 | 1184 | 811 | |
| Other | 213 | 502 | |||
| Postnatal FISH | 4776 | 22999 | 22653 | 5819b | |
| Microarray (CGH and SNPs) | 1443 | 8290 | |||
|
| 49696 | 70630 | 105410 | 108758 | 85263 |
|
| |||||
| Bone marrow | 23445 | 27323 | 34500 | 31538 | |
| Peripheral blood | 2873 | ||||
| Solid tumors | 1671 | 2482 | |||
| Metaphase ish | 8383 | 4112 | 6565 | 4142 | |
| Interphase ish | 27821 | ||||
| Microarray (CGH and SNPs) | 1916 | ||||
|
| 15948 | 33499 | 31435 | 41065 | 70772 |
| TOTAL CYTOGENETIC TESTS | 155866 | 229699 | 283598 | 312881 | 294155 |
aFISH for microdeletion syndromes (897), subtelomeric regions (276), extra structurally abnormal chromosomes (599) and rearrangement (1119) characterization. bFISH for microdeletion syndromes (2662), subtelomeric regions (1186), extra structurally abnormal chromosomes (455) and rearrangement (1516) characterization
Fig. 4CEQA Registration vs Enrolment (effective participation) of Italian Cytogenetic Laboratories during the last years
Fig. 5Molecular genetics analyses surveyed by SIGU since 1997
Disease genes amenable to analysis in Italy and Europe: scenario 2007–2012
| Year | |||
|---|---|---|---|
| 2007 | 2011 | 2012 | |
| Genes tested in Europe (source: Orphanet/EurogenTest) | 1500 | 1812 | 2179 |
| Genes tested in Italy (source: SIGU survey) | 556 (37 %) | 902 (50 %) | 1042 (48 %) |
Top 15 molecular genetic tests in Italy, year 2011
| Number | Percent | |
|---|---|---|
| Cystic fibrosis ( | 55716 | 21 |
| Factor V Leiden mutation ( | 24834 | 9 |
| Coagulation Factor II mutation ( | 20393 | 8 |
|
| 18526 | 7 |
| Celiac Disease ( | 11824 | 4 |
| Beta thalassemia ( | 7796 | 3 |
| Fragile X syndrome ( | 7695 | 3 |
| Chronic Myeloid Leukaemia ( | 7131 | 3 |
| Rheumatic Diseases ( | 6431 | 2 |
| Hemochromatosis ( | 5088 | 2 |
| Neurosensory deafness ( | 4895 | 2 |
| Duchenne/Becker muscular dystrophy (DMD) | 3823 | 1 |
| Breast cancer ( | 3821 | 1 |
| Acute Myeloid Leukaemia | 3579 | 1 |
| Y chromosome microdeletion ( | 3127 | 1 |
| Total | 184679 | 70 |
Fig. 6Increase of immunogenetic analyses in Italy since 2004
Reason for requesting genetic counselling in 2004–2011 period
| 2004 | 2007 | 2011 | |
|---|---|---|---|
| Prenatal chromosome anomalies | 7164 (13 %) | 15197 (21 %) | 10316 (10 %) |
| Postnatal chromosome anomalies | 4007 (7 %) | 4651 (6 %) | 5394 (5 %) |
| Dysmorphic disorders | 9967 (18 %) | 9800 (14 %) | 11129 (11 %) |
| Mendelian disorders | 8072 (15 %) | 10765 (15 %) | 20461 (20 %) |
| Intellectual disability | 5501 (10 %) | 5756 (8 %) | 7294 (7 %) |
| Cancer | 2548 (5 %) | 3435 (5 %) | 11303 (11 %) |
| Infertility | 2984 (5 %) | 6128 (8 %) | 12012 (12 %) |
| Recurrent abortion | 1919 (4 %) | 2930 (4 %) | 6109 (6 %) |
| Exposure to teratogenic agents | 2437 (4 %) | 2944 (4 %) | 1622 (2 %) |
| Other | 8001 (15 %) | 8548 (12 %) | 12350 (12 %) |
| Total | 54604 | 72161 | 100001 |
%, % of reason for demanding genetic counselling out of the total of the requests
Fig. 72004-2011 trend in demand for genetic counseling in Italy
Appropriateness of the requests for genetic testing in seven rare disorders and 2007–2011 trend
| Disorder | No. of clinically evaluated individuals | No. of cases confirmed by genetic testing | % of positive test (2011) | % of positive test (2007) | Trend from last survey |
|---|---|---|---|---|---|
| Williams Syndrome | 610 | 149 | 24 | 3 | ++ |
| DiGeorge/Velocardiofacial Syndrome | 2260 | 736 | 33 | 3 | ++ |
| Fragile X Syndrome | 8240 | 353 | 4 | 4 | = |
| Achondroplasia | 186 | 84 | 45 | 36 | + |
| Noonan Syndrome | 968 | 267 | 28 | NE | |
| Angelman Syndrome | 713 | 49 | 7 | 9 | - |
| Prader-Willi Syndrome | 927 | 78 | 8 | 18 | - - |
| Ankylosing spondylitis | 2826 | 418 | 15 | NE | |
| Celiac diseases | 6748 | 3488 | 52 | NE |
NE not evaluated
++ significant improvement
+ improvement
= no variations
- worsening
-- significant worsening