Literature DB >> 26987309

The Human Variome Project.

John Burn1, Michael Watson2.   

Abstract

The practical realization of genomics has meant a growing realization that variant interpretation is a major barrier to practical use of DNA sequence data. The late Professor Dick Cotton devoted his life to innovation in molecular genetics and was a prime mover in the international response to the need to understand the "variome." His leadership resulted in the launch first of the Human Genetic Variation Society and then, in 2006, an international agreement to launch the Human Variome Project (HVP), aimed at data integration enabled by standards and infrastructure of the databases of variants being identified in families with a range of inherited disorders. The project attracted a network of affiliates across 81 countries and earned formal recognition by UNESCO, which now hosts its biennial meetings. It has also signed a Memorandum of Understanding with the World Health Organization. Future progress will depend on longer term secure funding and integration with the efforts of the genomics community where the rapid advances in sequencing technology have enabled variant capture on a previously unimaginable scale. Efforts are underway to integrate the efforts of HVP with those of the Global Alliance for Genomics and Health to provide a lasting legacy of Dick Cotton's vision.
© 2016 WILEY PERIODICALS, INC.

Entities:  

Keywords:  GA4GH; Richard Cotton; UNESCO; Variome

Mesh:

Year:  2016        PMID: 26987309     DOI: 10.1002/humu.22986

Source DB:  PubMed          Journal:  Hum Mutat        ISSN: 1059-7794            Impact factor:   4.878


  9 in total

Review 1.  Genomics and electronic health record systems.

Authors:  Lucila Ohno-Machado; Jihoon Kim; Rodney A Gabriel; Grace M Kuo; Michael A Hogarth
Journal:  Hum Mol Genet       Date:  2018-05-01       Impact factor: 6.150

2.  Three decades of the Human Genome Organization.

Authors:  Charles Lee; Stylianos E Antonarakis; Ada Hamosh; John Burn
Journal:  Am J Med Genet A       Date:  2021-09-28       Impact factor: 2.578

3.  BRCA Challenge: BRCA Exchange as a global resource for variants in BRCA1 and BRCA2.

Authors:  Melissa S Cline; Rachel G Liao; Michael T Parsons; Benedict Paten; Faisal Alquaddoomi; Antonis Antoniou; Samantha Baxter; Larry Brody; Robert Cook-Deegan; Amy Coffin; Fergus J Couch; Brian Craft; Robert Currie; Chloe C Dlott; Lena Dolman; Johan T den Dunnen; Stephanie O M Dyke; Susan M Domchek; Douglas Easton; Zachary Fischmann; William D Foulkes; Judy Garber; David Goldgar; Mary J Goldman; Peter Goodhand; Steven Harrison; David Haussler; Kazuto Kato; Bartha Knoppers; Charles Markello; Robert Nussbaum; Kenneth Offit; Sharon E Plon; Jem Rashbass; Heidi L Rehm; Mark Robson; Wendy S Rubinstein; Dominique Stoppa-Lyonnet; Sean Tavtigian; Adrian Thorogood; Can Zhang; Marc Zimmermann; John Burn; Stephen Chanock; Gunnar Rätsch; Amanda B Spurdle
Journal:  PLoS Genet       Date:  2018-12-26       Impact factor: 5.917

4.  LOVD-DASH: A comprehensive LOVD database coupled with diagnosis and an at-risk assessment system for hemoglobinopathies.

Authors:  Li Zhang; Qianqian Zhang; Yaohua Tang; Peikuan Cong; Yuhua Ye; Shiping Chen; Xinhua Zhang; Yan Chen; Baosheng Zhu; Wangwei Cai; Shaoke Chen; Ren Cai; Xiaoling Guo; Chonglin Zhang; Yuqiu Zhou; Jie Zou; Yanhui Liu; Biyan Chen; Shanhuo Yan; Yajun Chen; Yuehong Zhou; Hongmei Ding; Xiarong Li; Dianyu Chen; Jianmei Zhong; Xuan Shang; Xuanzhu Liu; Ming Qi; Xiangmin Xu
Journal:  Hum Mutat       Date:  2019-09-11       Impact factor: 4.878

5.  Pathogenic convergence of CNVs in genes functionally associated to a severe neuromotor developmental delay syndrome.

Authors:  Juan L García-Hernández; Luis A Corchete; Íñigo Marcos-Alcalde; Paulino Gómez-Puertas; Carmen Fons; Pedro A Lazo
Journal:  Hum Genomics       Date:  2021-02-08       Impact factor: 4.639

6.  Global Globin Network Consensus Paper: Classification and Stratified Roadmaps for Improved Thalassaemia Care and Prevention in 32 Countries.

Authors:  Bin Hashim Halim-Fikri; Carsten W Lederer; Atif Amin Baig; Siti Nor Assyuhada Mat-Ghani; Sharifah-Nany Rahayu-Karmilla Syed-Hassan; Wardah Yusof; Diana Abdul Rashid; Nurul Fatihah Azman; Suthat Fucharoen; Ramdan Panigoro; Catherine Lynn T Silao; Vip Viprakasit; Norunaluwar Jalil; Norafiza Mohd Yasin; Rosnah Bahar; Veena Selvaratnam; Norsarwany Mohamad; Nik Norliza Nik Hassan; Ezalia Esa; Amanda Krause; Helen Robinson; Julia Hasler; Coralea Stephanou; Raja-Zahratul-Azma Raja-Sabudin; Jacques Elion; Ghada El-Kamah; Domenico Coviello; Narazah Yusoff; Zarina Abdul Latiff; Chris Arnold; John Burn; Petros Kountouris; Marina Kleanthous; Raj Ramesar; Bin Alwi Zilfalil
Journal:  J Pers Med       Date:  2022-03-31

7.  Data sharing as a national quality improvement program: reporting on BRCA1 and BRCA2 variant-interpretation comparisons through the Canadian Open Genetics Repository (COGR).

Authors:  Matthew S Lebo; Kathleen-Rose Zakoor; Kathy Chun; Marsha D Speevak; John S Waye; Elizabeth McCready; Jillian S Parboosingh; Ryan E Lamont; Harriet Feilotter; Ian Bosdet; Tracy Tucker; Sean Young; Aly Karsan; George S Charames; Ronald Agatep; Elizabeth L Spriggs; Caitlin Chisholm; Nasim Vasli; Hussein Daoud; Olga Jarinova; Robert Tomaszewski; Stacey Hume; Sherryl Taylor; Mohammad R Akbari; Jordan Lerner-Ellis
Journal:  Genet Med       Date:  2017-07-20       Impact factor: 8.822

8.  OPA1: 516 unique variants and 831 patients registered in an updated centralized Variome database.

Authors:  Bastien Le Roux; Guy Lenaers; Xavier Zanlonghi; Patrizia Amati-Bonneau; Floris Chabrun; Thomas Foulonneau; Angélique Caignard; Stéphanie Leruez; Philippe Gohier; Vincent Procaccio; Dan Milea; Johan T den Dunnen; Pascal Reynier; Marc Ferré
Journal:  Orphanet J Rare Dis       Date:  2019-09-10       Impact factor: 4.123

9.  The variome concept: focus on CNVariome.

Authors:  Ivan Y Iourov; Svetlana G Vorsanova; Yuri B Yurov
Journal:  Mol Cytogenet       Date:  2019-12-19       Impact factor: 2.009

  9 in total

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