Literature DB >> 26985140

A Small-Sample Choice of the Tuning Parameter in Ridge Regression.

Philip S Boonstra1, Bhramar Mukherjee1, Jeremy M G Taylor1.   

Abstract

We propose new approaches for choosing the shrinkage parameter in ridge regression, a penalized likelihood method for regularizing linear regression coefficients, when the number of observations is small relative to the number of parameters. Existing methods may lead to extreme choices of this parameter, which will either not shrink the coefficients enough or shrink them by too much. Within this "small-n, large-p" context, we suggest a correction to the common generalized cross-validation (GCV) method that preserves the asymptotic optimality of the original GCV. We also introduce the notion of a "hyperpenalty", which shrinks the shrinkage parameter itself, and make a specific recommendation regarding the choice of hyperpenalty that empirically works well in a broad range of scenarios. A simple algorithm jointly estimates the shrinkage parameter and regression coefficients in the hyperpenalized likelihood. In a comprehensive simulation study of small-sample scenarios, our proposed approaches offer superior prediction over nine other existing methods.

Entities:  

Keywords:  Akaike’s information criterion; Cross-validation; Generalized cross-validation; Hyperpenalty; Marginal likelihood; Penalized likelihood

Year:  2015        PMID: 26985140      PMCID: PMC4790465          DOI: 10.5705/ss.2013.284

Source DB:  PubMed          Journal:  Stat Sin        ISSN: 1017-0405            Impact factor:   1.261


  3 in total

1.  Incorporating auxiliary information for improved prediction in high-dimensional datasets: an ensemble of shrinkage approaches.

Authors:  Philip S Boonstra; Jeremy M G Taylor; Bhramar Mukherjee
Journal:  Biostatistics       Date:  2012-10-19       Impact factor: 5.899

2.  Regulation of gene expression in the mammalian eye and its relevance to eye disease.

Authors:  Todd E Scheetz; Kwang-Youn A Kim; Ruth E Swiderski; Alisdair R Philp; Terry A Braun; Kevin L Knudtson; Anne M Dorrance; Gerald F DiBona; Jian Huang; Thomas L Casavant; Val C Sheffield; Edwin M Stone
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-18       Impact factor: 11.205

3.  Homozygosity mapping with SNP arrays identifies TRIM32, an E3 ubiquitin ligase, as a Bardet-Biedl syndrome gene (BBS11).

Authors:  Annie P Chiang; John S Beck; Hsan-Jan Yen; Marwan K Tayeh; Todd E Scheetz; Ruth E Swiderski; Darryl Y Nishimura; Terry A Braun; Kwang-Youn A Kim; Jian Huang; Khalil Elbedour; Rivka Carmi; Diane C Slusarski; Thomas L Casavant; Edwin M Stone; Val C Sheffield
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-10       Impact factor: 11.205

  3 in total

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