Literature DB >> 26984061

Peripheral blood collection: the first step towards gene expression profiling.

Carmen Franken1,2, Sylvie Remy1,3, Nathalie Lambrechts1, Karen Hollanders1, Elly Den Hond1, Greet Schoeters1,2,4.   

Abstract

A crucial challenge for gene expression analysis in human biomonitoring studies on whole blood samples is rapid sample handling and mRNA stabilization. This study was designed to evaluate the impact of short bench times (less than 30 min) on yield, quality and gene expression of mRNA in the presence of different stabilization buffers (Tempus(TM) Blood RNA tube and RNAlater(®) Stabilization Reagent). Microarray analyzes showed significant changes over short periods of time in expression of a considerate part of the transcriptome (2356 genes) with a prominent role for NFкB-, cancer- and glucocorticoid-mediated networks, and specifically interleukin-8 (IL-8). These findings suggest that even short bench times affect gene expression, requiring to carry out blood collection in a strictly standardized way.

Entities:  

Keywords:  Bench time; IL-8; RNA stability; biomarker; human blood sampling

Mesh:

Substances:

Year:  2016        PMID: 26984061     DOI: 10.3109/1354750X.2016.1153721

Source DB:  PubMed          Journal:  Biomarkers        ISSN: 1354-750X            Impact factor:   2.658


  6 in total

1.  Impact of blood collection and processing on peripheral blood gene expression profiling in type 1 diabetes.

Authors:  Linda Yip; Rebecca Fuhlbrigge; Mark A Atkinson; C Garrison Fathman
Journal:  BMC Genomics       Date:  2017-08-18       Impact factor: 3.969

2.  Influence of storage conditions of small volumes of blood on immune transcriptomic profiles.

Authors:  Rebecca Mathew; Mohammed Toufiq; Valentina Mattei; Muna Al Hashmi; Harshitha Shobha Manjunath; Basirudeen Syed Ahamed Kabeer; Rita Calzone; Chiara Cugno; Damien Chaussabel; Sara Deola; Sara Tomei
Journal:  BMC Res Notes       Date:  2020-03-13

3.  Investigating gene expression profiles of whole blood and peripheral blood mononuclear cells using multiple collection and processing methods.

Authors:  Aarti Gautam; Duncan Donohue; Allison Hoke; Stacy Ann Miller; Seshamalini Srinivasan; Bintu Sowe; Leanne Detwiler; Jesse Lynch; Michael Levangie; Rasha Hammamieh; Marti Jett
Journal:  PLoS One       Date:  2019-12-06       Impact factor: 3.240

4.  Circular RNAs in peripheral blood mononuclear cells are more stable than linear RNAs upon sample processing delay.

Authors:  Guoxia Wen; Wanjun Gu
Journal:  J Cell Mol Med       Date:  2022-08-30       Impact factor: 5.295

5.  The impact of pre-freezing storage time and temperature on gene expression of blood collected in EDTA tubes.

Authors:  Serena Martire; Paola Valentino; Fabiana Marnetto; Luca Mirabile; Marco Capobianco; Antonio Bertolotto
Journal:  Mol Biol Rep       Date:  2022-03-12       Impact factor: 2.742

6.  Comparison of procedures for RNA-extraction from peripheral blood mononuclear cells.

Authors:  Antonio Rodríguez; Hans Duyvejonck; Jonas D Van Belleghem; Tessa Gryp; Leen Van Simaey; Stefan Vermeulen; Els Van Mechelen; Mario Vaneechoutte
Journal:  PLoS One       Date:  2020-02-21       Impact factor: 3.240

  6 in total

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