Literature DB >> 26982729

Lytic to temperate switching of viral communities.

B Knowles1, C B Silveira1,2, B A Bailey3, K Barott4, V A Cantu5, A G Cobián-Güemes1, F H Coutinho2,6, E A Dinsdale1,6, B Felts3, K A Furby7, E E George1, K T Green1, G B Gregoracci8, A F Haas1, J M Haggerty1, E R Hester1, N Hisakawa1, L W Kelly1, Y W Lim1, M Little1, A Luque3,5,5, T McDole-Somera7, K McNair5, L S de Oliveira2, S D Quistad1, N L Robinett1, E Sala9, P Salamon3,10, S E Sanchez1, S Sandin7, G G Z Silva5, J Smith7, C Sullivan11, C Thompson2, M J A Vermeij12,10, M Youle13, C Young14, B Zgliczynski7, R Brainard14, R A Edwards5,6,6, J Nulton3, F Thompson2, F Rohwer1,10.   

Abstract

Microbial viruses can control host abundances via density-dependent lytic predator-prey dynamics. Less clear is how temperate viruses, which coexist and replicate with their host, influence microbial communities. Here we show that virus-like particles are relatively less abundant at high host densities. This suggests suppressed lysis where established models predict lytic dynamics are favoured. Meta-analysis of published viral and microbial densities showed that this trend was widespread in diverse ecosystems ranging from soil to freshwater to human lungs. Experimental manipulations showed viral densities more consistent with temperate than lytic life cycles at increasing microbial abundance. An analysis of 24 coral reef viromes showed a relative increase in the abundance of hallmark genes encoded by temperate viruses with increased microbial abundance. Based on these four lines of evidence, we propose the Piggyback-the-Winner model wherein temperate dynamics become increasingly important in ecosystems with high microbial densities; thus 'more microbes, fewer viruses'.

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Year:  2016        PMID: 26982729     DOI: 10.1038/nature17193

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  57 in total

1.  Virus-bacterium interactions in water and sediment of West African inland aquatic systems.

Authors:  Yvan Bettarel; Marc Bouvy; Claire Dumont; Télesphore Sime-Ngando
Journal:  Appl Environ Microbiol       Date:  2006-08       Impact factor: 4.792

Review 2.  Marine viruses--major players in the global ecosystem.

Authors:  Curtis A Suttle
Journal:  Nat Rev Microbiol       Date:  2007-10       Impact factor: 60.633

3.  Comparative metagenomics: natural populations of induced prophages demonstrate highly unique, lower diversity viral sequences.

Authors:  Lauren D McDaniel; Karyna Rosario; Mya Breitbart; John H Paul
Journal:  Environ Microbiol       Date:  2013-07-23       Impact factor: 5.491

4.  Significance of Lysogeny in the Marine Environment: Studies with Isolates and a Model of Lysogenic Phage Production

Authors: 
Journal:  Microb Ecol       Date:  1998-05       Impact factor: 4.552

5.  Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors.

Authors:  Linda W Kelly; Gareth J Williams; Katie L Barott; Craig A Carlson; Elizabeth A Dinsdale; Robert A Edwards; Andreas F Haas; Matthew Haynes; Yan Wei Lim; Tracey McDole; Craig E Nelson; Enric Sala; Stuart A Sandin; Jennifer E Smith; Mark J A Vermeij; Merry Youle; Forest Rohwer
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-30       Impact factor: 11.205

6.  Bacteriophage adhering to mucus provide a non-host-derived immunity.

Authors:  Jeremy J Barr; Rita Auro; Mike Furlan; Katrine L Whiteson; Marcella L Erb; Joe Pogliano; Aleksandr Stotland; Roland Wolkowicz; Andrew S Cutting; Kelly S Doran; Peter Salamon; Merry Youle; Forest Rohwer
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-20       Impact factor: 11.205

7.  Fast identification and removal of sequence contamination from genomic and metagenomic datasets.

Authors:  Robert Schmieder; Robert Edwards
Journal:  PLoS One       Date:  2011-03-09       Impact factor: 3.240

8.  The marine viromes of four oceanic regions.

Authors:  Florent E Angly; Ben Felts; Mya Breitbart; Peter Salamon; Robert A Edwards; Craig Carlson; Amy M Chan; Matthew Haynes; Scott Kelley; Hong Liu; Joseph M Mahaffy; Jennifer E Mueller; Jim Nulton; Robert Olson; Rachel Parsons; Steve Rayhawk; Curtis A Suttle; Forest Rohwer
Journal:  PLoS Biol       Date:  2006-11       Impact factor: 8.029

9.  Phage Phenomics: Physiological Approaches to Characterize Novel Viral Proteins.

Authors:  Savannah E Sanchez; Daniel A Cuevas; Jason E Rostron; Tiffany Y Liang; Cullen G Pivaroff; Matthew R Haynes; Jim Nulton; Ben Felts; Barbara A Bailey; Peter Salamon; Robert A Edwards; Alex B Burgin; Anca M Segall; Forest Rohwer
Journal:  J Vis Exp       Date:  2015-06-11       Impact factor: 1.355

10.  CD-HIT: accelerated for clustering the next-generation sequencing data.

Authors:  Limin Fu; Beifang Niu; Zhengwei Zhu; Sitao Wu; Weizhong Li
Journal:  Bioinformatics       Date:  2012-10-11       Impact factor: 6.937

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  150 in total

1.  Temperature is a key factor in Micromonas-virus interactions.

Authors:  David Demory; Laure Arsenieff; Nathalie Simon; Christophe Six; Fabienne Rigaut-Jalabert; Dominique Marie; Pei Ge; Estelle Bigeard; Stéphan Jacquet; Antoine Sciandra; Olivier Bernard; Sophie Rabouille; Anne-Claire Baudoux
Journal:  ISME J       Date:  2017-01-13       Impact factor: 10.302

Review 2.  Soil Aggregate Microbial Communities: Towards Understanding Microbiome Interactions at Biologically Relevant Scales.

Authors:  Regina L Wilpiszeski; Jayde A Aufrecht; Scott T Retterer; Matthew B Sullivan; David E Graham; Eric M Pierce; Olivier D Zablocki; Anthony V Palumbo; Dwayne A Elias
Journal:  Appl Environ Microbiol       Date:  2019-07-01       Impact factor: 4.792

Review 3.  The impact of quorum sensing on the modulation of phage-host interactions.

Authors:  Josefina León-Félix; Claudia Villicaña
Journal:  J Bacteriol       Date:  2021-01-19       Impact factor: 3.490

Review 4.  Omics in gut microbiome analysis.

Authors:  Tae Woong Whon; Na-Ri Shin; Joon Yong Kim; Seong Woon Roh
Journal:  J Microbiol       Date:  2021-02-23       Impact factor: 3.422

Review 5.  Ménage à trois in the human gut: interactions between host, bacteria and phages.

Authors:  Mohammadali Khan Mirzaei; Corinne F Maurice
Journal:  Nat Rev Microbiol       Date:  2017-05-02       Impact factor: 60.633

6.  Quorum sensing controls the Pseudomonas aeruginosa CRISPR-Cas adaptive immune system.

Authors:  Nina M Høyland-Kroghsbo; Jon Paczkowski; Sampriti Mukherjee; Jenny Broniewski; Edze Westra; Joseph Bondy-Denomy; Bonnie L Bassler
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-14       Impact factor: 11.205

7.  How adaptive immunity constrains the composition and fate of large bacterial populations.

Authors:  Madeleine Bonsma-Fisher; Dominique Soutière; Sidhartha Goyal
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-23       Impact factor: 11.205

8.  Prophage-mediated defence against viral attack and viral counter-defence.

Authors:  Rebekah M Dedrick; Deborah Jacobs-Sera; Carlos A Guerrero Bustamante; Rebecca A Garlena; Travis N Mavrich; Welkin H Pope; Juan C Cervantes Reyes; Daniel A Russell; Tamarah Adair; Richard Alvey; J Alfred Bonilla; Jerald S Bricker; Bryony R Brown; Deanna Byrnes; Steven G Cresawn; William B Davis; Leon A Dickson; Nicholas P Edgington; Ann M Findley; Urszula Golebiewska; Julianne H Grose; Cory F Hayes; Lee E Hughes; Keith W Hutchison; Sharon Isern; Allison A Johnson; Margaret A Kenna; Karen K Klyczek; Catherine M Mageeney; Scott F Michael; Sally D Molloy; Matthew T Montgomery; James Neitzel; Shallee T Page; Marie C Pizzorno; Marianne K Poxleitner; Claire A Rinehart; Courtney J Robinson; Michael R Rubin; Joseph N Teyim; Edwin Vazquez; Vassie C Ware; Jacqueline Washington; Graham F Hatfull
Journal:  Nat Microbiol       Date:  2017-01-09       Impact factor: 17.745

9.  Energetic differences between bacterioplankton trophic groups and coral reef resistance.

Authors:  Tracey McDole Somera; Barbara Bailey; Katie Barott; Juris Grasis; Mark Hatay; Brett J Hilton; Nao Hisakawa; Bahador Nosrat; James Nulton; Cynthia B Silveira; Chris Sullivan; Russell E Brainard; Forest Rohwer
Journal:  Proc Biol Sci       Date:  2016-04-27       Impact factor: 5.349

10.  Lysogeny in the Lactic Acid Bacterium Oenococcus oeni Is Responsible for Modified Colony Morphology on Red Grape Juice Agar.

Authors:  Amel Chaïb; Cécile Philippe; Féty Jaomanjaka; Olivier Claisse; Mickaël Jourdes; Patrick Lucas; Stéphanie Cluzet; Claire Le Marrec
Journal:  Appl Environ Microbiol       Date:  2019-09-17       Impact factor: 4.792

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