Literature DB >> 26980751

The holistic rhizosphere: integrating zones, processes, and semantics in the soil influenced by roots.

Larry M York1, Andrea Carminati2, Sacha J Mooney3, Karl Ritz3, Malcolm J Bennett3.   

Abstract

Despite often being conceptualized as a thin layer of soil around roots, the rhizosphere is actually a dynamic system of interacting processes. Hiltner originally defined the rhizosphere as the soil influenced by plant roots. However, soil physicists, chemists, microbiologists, and plant physiologists have studied the rhizosphere independently, and therefore conceptualized the rhizosphere in different ways and using contrasting terminology. Rather than research-specific conceptions of the rhizosphere, the authors propose a holistic rhizosphere encapsulating the following components: microbial community gradients, macroorganisms, mucigel, volumes of soil structure modification, and depletion or accumulation zones of nutrients, water, root exudates, volatiles, and gases. These rhizosphere components are the result of dynamic processes and understanding the integration of these processes will be necessary for future contributions to rhizosphere science based upon interdisciplinary collaborations. In this review, current knowledge of the rhizosphere is synthesized using this holistic perspective with a focus on integrating traditionally separated rhizosphere studies. The temporal dynamics of rhizosphere activities will also be considered, from annual fine root turnover to diurnal fluctuations of water and nutrient uptake. The latest empirical and computational methods are discussed in the context of rhizosphere integration. Clarification of rhizosphere semantics, a holistic model of the rhizosphere, examples of integration of rhizosphere studies across disciplines, and review of the latest rhizosphere methods will empower rhizosphere scientists from different disciplines to engage in the interdisciplinary collaborations needed to break new ground in truly understanding the rhizosphere and to apply this knowledge for practical guidance.
© The Author 2016. Published by Oxford University Press on behalf of the Society for Experimental Biology. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Entities:  

Keywords:  Depletion; microbial; mucilage; nutrient; plant; rhizodeposition; root; soil.

Mesh:

Substances:

Year:  2016        PMID: 26980751     DOI: 10.1093/jxb/erw108

Source DB:  PubMed          Journal:  J Exp Bot        ISSN: 0022-0957            Impact factor:   6.992


  30 in total

1.  Root exudate of Solanum tuberosum is enriched in galactose-containing molecules and impacts the growth of Pectobacterium atrosepticum.

Authors:  Abdoul Salam Koroney; Carole Plasson; Barbara Pawlak; Ramatou Sidikou; Azeddine Driouich; Laurence Menu-Bouaouiche; Maïté Vicré-Gibouin
Journal:  Ann Bot       Date:  2016-10-01       Impact factor: 4.357

2.  Effects of Agricultural Management on Rhizosphere Microbial Structure and Function in Processing Tomato Plants.

Authors:  Jennifer E Schmidt; Rachel L Vannette; Alexandria Igwe; Rob Blundell; Clare L Casteel; Amélie C M Gaudin
Journal:  Appl Environ Microbiol       Date:  2019-08-01       Impact factor: 4.792

3.  Spatially Resolved Root Water Uptake Determination Using a Precise Soil Water Sensor.

Authors:  Dagmar van Dusschoten; Johannes Kochs; Christian W Kuppe; Viktor A Sydoruk; Valentin Couvreur; Daniel Pflugfelder; Johannes A Postma
Journal:  Plant Physiol       Date:  2020-09-04       Impact factor: 8.340

Review 4.  Targeting Root Ion Uptake Kinetics to Increase Plant Productivity and Nutrient Use Efficiency.

Authors:  Marcus Griffiths; Larry M York
Journal:  Plant Physiol       Date:  2020-02-06       Impact factor: 8.340

5.  Identifying plant genes shaping microbiota composition in the barley rhizosphere.

Authors:  Carmen Escudero-Martinez; Max Coulter; Rodrigo Alegria Terrazas; Alexandre Foito; Rumana Kapadia; Laura Pietrangelo; Mauro Maver; Rajiv Sharma; Alessio Aprile; Jenny Morris; Pete E Hedley; Andreas Maurer; Klaus Pillen; Gino Naclerio; Tanja Mimmo; Geoffrey J Barton; Robbie Waugh; James Abbott; Davide Bulgarelli
Journal:  Nat Commun       Date:  2022-06-16       Impact factor: 17.694

Review 6.  A starting guide to root ecology: strengthening ecological concepts and standardising root classification, sampling, processing and trait measurements.

Authors:  Grégoire T Freschet; Loïc Pagès; Colleen M Iversen; Louise H Comas; Boris Rewald; Catherine Roumet; Jitka Klimešová; Marcin Zadworny; Hendrik Poorter; Johannes A Postma; Thomas S Adams; Agnieszka Bagniewska-Zadworna; A Glyn Bengough; Elison B Blancaflor; Ivano Brunner; Johannes H C Cornelissen; Eric Garnier; Arthur Gessler; Sarah E Hobbie; Ina C Meier; Liesje Mommer; Catherine Picon-Cochard; Laura Rose; Peter Ryser; Michael Scherer-Lorenzen; Nadejda A Soudzilovskaia; Alexia Stokes; Tao Sun; Oscar J Valverde-Barrantes; Monique Weemstra; Alexandra Weigelt; Nina Wurzburger; Larry M York; Sarah A Batterman; Moemy Gomes de Moraes; Štěpán Janeček; Hans Lambers; Verity Salmon; Nishanth Tharayil; M Luke McCormack
Journal:  New Phytol       Date:  2021-11       Impact factor: 10.323

7.  Root hairs increase rhizosphere extension and carbon input to soil.

Authors:  Maire Holz; Mohsen Zarebanadkouki; Yakov Kuzyakov; Johanna Pausch; Andrea Carminati
Journal:  Ann Bot       Date:  2018-01-25       Impact factor: 4.357

Review 8.  Biophysical processes supporting the diversity of microbial life in soil.

Authors:  Robin Tecon; Dani Or
Journal:  FEMS Microbiol Rev       Date:  2017-09-01       Impact factor: 16.408

Review 9.  Effects of Secondary Plant Metabolites on Microbial Populations: Changes in Community Structure and Metabolic Activity in Contaminated Environments.

Authors:  Lucie Musilova; Jakub Ridl; Marketa Polivkova; Tomas Macek; Ondrej Uhlik
Journal:  Int J Mol Sci       Date:  2016-07-29       Impact factor: 5.923

Review 10.  Rooting in the Desert: A Developmental Overview on Desert Plants.

Authors:  Gwendolyn K Kirschner; Ting Ting Xiao; Ikram Blilou
Journal:  Genes (Basel)       Date:  2021-05-10       Impact factor: 4.096

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