Literature DB >> 26980177

SELEX Modifications and Bioanalytical Techniques for Aptamer-Target Binding Characterization.

Sze Y Tan1,2, Caleb Acquah1,2, Amandeep Sidhu2,3, Clarence M Ongkudon4, L S Yon1, Michael K Danquah1,2.   

Abstract

The quest to improve the detection of biomolecules and cells in health and life sciences has led to the discovery and characterization of various affinity bioprobes. Libraries of synthetic oligonucleotides (ssDNA/ssRNA) with randomized sequences are employed during Systematic Evolution of Ligands by Exponential Enrichment (SELEX) to select highly specific affinity probes called aptamers. With much focus on the generation of aptamers for a variety of target molecules, conventional SELEX protocols have been modified to develop new and improved SELEX protocols yielding highly specific and stable aptamers. Various techniques have been used to analyze the binding interactions between aptamers and their cognate molecules with associated merits and limitations. This article comprehensively reviews research advancements in the generation of aptamers, analyses physicochemical conditions affecting their binding characteristics to cellular and biomolecular targets, and discusses various field applications of aptameric binding. Biophysical techniques employed in the characterization of the molecular and binding features of aptamers to their cognate targets are also discussed.

Entities:  

Keywords:  Aptamer; SELEX; biomolecules; biophysical techniques; cellular targets

Mesh:

Substances:

Year:  2016        PMID: 26980177     DOI: 10.1080/10408347.2016.1157014

Source DB:  PubMed          Journal:  Crit Rev Anal Chem        ISSN: 1040-8347            Impact factor:   6.535


  11 in total

Review 1.  Fluorescence-Based Strategies to Investigate the Structure and Dynamics of Aptamer-Ligand Complexes.

Authors:  Cibran Perez-Gonzalez; Daniel A Lafontaine; J Carlos Penedo
Journal:  Front Chem       Date:  2016-08-03       Impact factor: 5.221

Review 2.  Aptamers Selected for Recognizing Amyloid β-Protein-A Case for Cautious Optimism.

Authors:  Farid Rahimi
Journal:  Int J Mol Sci       Date:  2018-02-27       Impact factor: 5.923

Review 3.  Chemical Modification of Aptamers for Increased Binding Affinity in Diagnostic Applications: Current Status and Future Prospects.

Authors:  Jan P Elskens; Joke M Elskens; Annemieke Madder
Journal:  Int J Mol Sci       Date:  2020-06-25       Impact factor: 5.923

Review 4.  Development of Cell-Specific Aptamers: Recent Advances and Insight into the Selection Procedures.

Authors:  Kamal Rahimizadeh; Hadi AlShamaileh; Milena Fratini; Madhuri Chakravarthy; Michelle Stephen; Sarah Shigdar; Rakesh N Veedu
Journal:  Molecules       Date:  2017-11-27       Impact factor: 4.411

5.  Impact of the Position of the Chemically Modified 5-Furyl-2'-Deoxyuridine Nucleoside on the Thrombin DNA Aptamer-Protein Complex: Structural Insights into Aptamer Response from MD Simulations.

Authors:  Preethi Seelam Prabhakar; Richard A Manderville; Stacey D Wetmore
Journal:  Molecules       Date:  2019-08-10       Impact factor: 4.411

6.  Characterisation of aptamer-anchored poly(EDMA-co-GMA) monolith for high throughput affinity binding.

Authors:  Caleb Acquah; Yi Wei Chan; Sharadwata Pan; Lau Sie Yon; Clarence M Ongkudon; Haobo Guo; Michael K Danquah
Journal:  Sci Rep       Date:  2019-10-10       Impact factor: 4.379

7.  One-Pot SELEX: Identification of Specific Aptamers against Diverse Steroid Targets in One Selection.

Authors:  Miriam Jauset-Rubio; Mary Luz Botero; Vasso Skouridou; Gülsen Betül Aktas; Marketa Svobodova; Abdulaziz S Bashammakh; Mohammad S El-Shahawi; Abdulrahman O Alyoubi; Ciara K O'Sullivan
Journal:  ACS Omega       Date:  2019-11-20

Review 8.  Peptides, Antibodies, Peptide Antibodies and More.

Authors:  Nicole Trier; Paul Hansen; Gunnar Houen
Journal:  Int J Mol Sci       Date:  2019-12-13       Impact factor: 5.923

Review 9.  Aptamers-Diagnostic and Therapeutic Solution in SARS-CoV-2.

Authors:  Tomasz Wandtke; Ewelina Wędrowska; Marcin Szczur; Grzegorz Przybylski; Marek Libura; Piotr Kopiński
Journal:  Int J Mol Sci       Date:  2022-01-26       Impact factor: 5.923

10.  Fullerenol Quantum Dots-Based Highly Sensitive Fluorescence Aptasensor for Patulin in Apple Juice.

Authors:  Hua Pang; Hui Li; Wen Zhang; Jin Mao; Liangxiao Zhang; Zhaowei Zhang; Qi Zhang; Du Wang; Jun Jiang; Peiwu Li
Journal:  Toxins (Basel)       Date:  2022-04-12       Impact factor: 5.075

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