Literature DB >> 26977825

Toward Global Biobank Integration by Implementation of the Minimum Information About BIobank Data Sharing (MIABIS 2.0 Core).

Roxana Merino-Martinez1, Loreana Norlin1, David van Enckevort2, Gabriele Anton3, Simone Schuffenhauer4, Kaisa Silander5, Linda Mook2, Petr Holub6, Raffael Bild7, Morris Swertz2, Jan-Eric Litton6.   

Abstract

Biobanks are the biological back end of data-driven medicine, but lack standards and generic solutions for interoperability and information harmonization. The move toward a global information infrastructure for biobanking demands semantic interoperability through harmonized services and common ontologies. To tackle this issue, the Minimum Information About BIobank data Sharing (MIABIS) was developed in 2012 by the Biobanking and BioMolecular Resources Research Infrastructure of Sweden (BBMRI.se). The wide acceptance of the first version of MIABIS encouraged evolving it to a more structured and descriptive standard. In 2013 a working group was formed under the largest infrastructure for health in Europe, Biobanking and BioMolecular Resources Research Infrastructure (BBMRI-ERIC), with the remit to continue the development of MIABIS (version 2.0) through a multicountry governance process. MIABIS 2.0 Core has been developed with 22 attributes describing Biobanks, Sample Collections, and Studies according to a modular structure that makes it easier to adhere to and to extend the standard. This integration standard will make a great contribution to the discovery and exploitation of biobank resources and lead to a wider and more efficient use of valuable bioresources, thereby speeding up the research on human diseases. Many within the European Union have accepted MIABIS 2.0 Core as the "de facto" biobank information standard.

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Mesh:

Year:  2016        PMID: 26977825     DOI: 10.1089/bio.2015.0070

Source DB:  PubMed          Journal:  Biopreserv Biobank        ISSN: 1947-5543            Impact factor:   2.300


  24 in total

1.  What's in a sample? Increasing transparency in biospecimen procurement methods.

Authors:  Joshua LaBaer; Joseph F Miceli; Leonard P Freedman
Journal:  Nat Methods       Date:  2018-04-27       Impact factor: 28.547

Review 2.  Leveraging European infrastructures to access 1 million human genomes by 2022.

Authors:  Gary Saunders; Michael Baudis; Regina Becker; Sergi Beltran; Christophe Béroud; Ewan Birney; Cath Brooksbank; Søren Brunak; Marc Van den Bulcke; Rachel Drysdale; Salvador Capella-Gutierrez; Paul Flicek; Francesco Florindi; Peter Goodhand; Ivo Gut; Jaap Heringa; Petr Holub; Jef Hooyberghs; Nick Juty; Thomas M Keane; Jan O Korbel; Ilkka Lappalainen; Brane Leskosek; Gert Matthijs; Michaela Th Mayrhofer; Andres Metspalu; Arcadi Navarro; Steven Newhouse; Tommi Nyrönen; Angela Page; Bengt Persson; Aarno Palotie; Helen Parkinson; Jordi Rambla; David Salgado; Erik Steinfelder; Morris A Swertz; Alfonso Valencia; Susheel Varma; Niklas Blomberg; Serena Scollen
Journal:  Nat Rev Genet       Date:  2019-08-27       Impact factor: 53.242

Review 3.  Bridging gaps between images and data: a systematic update on imaging biobanks.

Authors:  Michela Gabelloni; Lorenzo Faggioni; Rita Borgheresi; Giuliana Restante; Jorge Shortrede; Lorenzo Tumminello; Camilla Scapicchio; Francesca Coppola; Dania Cioni; Ignacio Gómez-Rico; Luis Martí-Bonmatí; Emanuele Neri
Journal:  Eur Radiol       Date:  2022-01-10       Impact factor: 5.315

4.  The Andalusian Registry of Donors for Biomedical Research: Five Years of History.

Authors:  Rocío Aguilar-Quesada; Inés Aroca-Siendones; Leticia de la Torre; Sonia Panadero-Fajardo; Juan David Rejón; Ana María Sánchez-López; Blanca Miranda
Journal:  BioTech (Basel)       Date:  2021-03-12

5.  Driving innovation through collaboration: development of clinical annotation datasets for brain cancer biobanking.

Authors:  Craig Gedye; Mythily Sachchithananthan; Robyn Leonard; Rosalind L Jeffree; Michael E Buckland; David S Ziegler; Manuel B Graeber; Bryan W Day; Kerrie L McDonald; Arian Lasocki; Anna K Nowak
Journal:  Neurooncol Pract       Date:  2019-08-27

6.  BBMRI-ERIC Directory: 515 Biobanks with Over 60 Million Biological Samples.

Authors:  Petr Holub; Morris Swertz; Robert Reihs; David van Enckevort; Heimo Müller; Jan-Eric Litton
Journal:  Biopreserv Biobank       Date:  2016-12       Impact factor: 2.300

7.  Cyberinfrastructure for Open Science at the Montreal Neurological Institute.

Authors:  Samir Das; Tristan Glatard; Christine Rogers; John Saigle; Santiago Paiva; Leigh MacIntyre; Mouna Safi-Harab; Marc-Etienne Rousseau; Jordan Stirling; Najmeh Khalili-Mahani; David MacFarlane; Penelope Kostopoulos; Pierre Rioux; Cecile Madjar; Xavier Lecours-Boucher; Sandeep Vanamala; Reza Adalat; Zia Mohaddes; Vladimir S Fonov; Sylvain Milot; Ilana Leppert; Clotilde Degroot; Thomas M Durcan; Tara Campbell; Jeremy Moreau; Alain Dagher; D Louis Collins; Jason Karamchandani; Amit Bar-Or; Edward A Fon; Rick Hoge; Sylvain Baillet; Guy Rouleau; Alan C Evans
Journal:  Front Neuroinform       Date:  2017-01-06       Impact factor: 4.081

8.  Baobab Laboratory Information Management System: Development of an Open-Source Laboratory Information Management System for Biobanking.

Authors:  Hocine Bendou; Lunga Sizani; Tim Reid; Carmen Swanepoel; Toluwaleke Ademuyiwa; Roxana Merino-Martinez; Heimo Meuller; Akin Abayomi; Alan Christoffels
Journal:  Biopreserv Biobank       Date:  2017-04-04       Impact factor: 2.300

9.  BiobankUniverse: automatic matchmaking between datasets for biobank data discovery and integration.

Authors:  Chao Pang; Fleur Kelpin; David van Enckevort; Niina Eklund; Kaisa Silander; Dennis Hendriksen; Mark de Haan; Jonathan Jetten; Tommy de Boer; Bart Charbon; Petr Holub; Hans Hillege; Morris A Swertz
Journal:  Bioinformatics       Date:  2017-11-15       Impact factor: 6.937

Review 10.  [Making COVID-19 research data more accessible-building a nationwide information infrastructure].

Authors:  Carsten Oliver Schmidt; Juliane Fluck; Martin Golebiewski; Linus Grabenhenrich; Horst Hahn; Toralf Kirsten; Sebastian Klammt; Matthias Löbe; Ulrich Sax; Sylvia Thun; Iris Pigeot
Journal:  Bundesgesundheitsblatt Gesundheitsforschung Gesundheitsschutz       Date:  2021-07-23       Impact factor: 1.513

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