| Literature DB >> 26973511 |
Andrew G Hoss1, Adam Labadorf2, Thomas G Beach3, Jeanne C Latourelle4, Richard H Myers5.
Abstract
OBJECTIVE: The goal of this study was to compare the microRNA (miRNA) profile of Parkinson's disease (PD) frontal cortex with normal control brain, allowing for the identification of PD specific signatures as well as study the disease-related phenotypes of onset age and dementia.Entities:
Keywords: Huntington's disease; Parkinson's disease; cortex; dementia; miRNA; small RNA sequencing
Year: 2016 PMID: 26973511 PMCID: PMC4772525 DOI: 10.3389/fnagi.2016.00036
Source DB: PubMed Journal: Front Aging Neurosci ISSN: 1663-4365 Impact factor: 5.750
Summarized sample information.
| Control | 33 | – | – | 68.1 ± 14.8 | 15.0 ± 8.7 | 7.6 ± 0.7 |
| All diagnosed PD | 29 | 66.5 ± 9.8 | 10.5 ± 6.5 | 77.6 ± 9.0 | 11.1 ± 9.7 | 7.3 ± 0.7 |
| PD, Non demented | 18 | 64.1 ± 7.2 | 11.5 ± 6.4 | 76.1 ± 8.9 | 11.9 ± 9.2 | 7.2 ± 0.8 |
| PD with dementia | 11 | 69.8 ± 12.2 | 9.2 ± 6.7 | 79.9 ± 9.0 | 9.9 ± 10.9 | 7.5 ± 0.5 |
Ages at death were significantly different between controls and PD, as indicated (
p < 0.01 compared to controls). No differences between PDN and PDD were observed.
Figure 1miRNA changes related to Parkinson's disease. (A) Heatmap of 29 miRNAs differentially expressed between PD and control prefrontal cortex samples with log fold changes (LFC) greater than 0.5 or less than −0.5. Scaled level values are color-coded according to the legend on the right. The dendrogram on the left depicts hierarchical clustering based on level. The top dendrogram depicts clustering based on the miRNA signal from each sample. The top bar indicates disease status [blue: control, yellow: PD, non-demented (PDN), orange: PD with dementia (PDD)]. (B) Disease prediction using 29 miRNAs. Scores less than zero were called as non-diseased whereas scores above zero were called as PD. Blue circles = control, yellow boxes = PD, orange triangles = PDN.
Figure 2miRNA profile for Parkinson's disease with dementia. (A) Line plot for the 125 DE miRNAs in PD. The counts were scaled using Z-transformation, and the means were calculated for each miRNA for each condition (control, PDN, PDD). The line colors correspond to the beta estimates from the ordinal regression analysis, where blue=negative ordered relationship and red=positive ordered relationship. (B) PDN/PDD class prediction, using the 36 nominally significant miRNAs from PDN/PDD differential expression analysis. Four errors were observed among the 29 samples studied which may reflect heterogeneity in the etiology of PD.
Figure 3miR-10b-5p levels are associated with motor onset age in both Parkinson's and Huntington's disease. (A) Scatterplot of miR-10b-5p levels to motor onset age in Parkinson's disease (PD). In PD, miR-10b-5p levels exhibit a positive association to onset. (B) Comparison of miR-10b-5p level in PD and HD. *q < 0.05, ***q < 0.001, p-values adjusted for genome-wide comparisons. (C) Scatterplot of miR-10b-5p levels to motor onset age in Huntington's disease (HD). In HD, miR-10b-5p levels exhibit a negative association to onset.