Literature DB >> 26971075

How to Build a Complex, Functional Propeller Protein, From Parts.

Patricia L Clark1.   

Abstract

By combining ancestral sequence reconstruction and in vitro evolution, Smock et al. identified single motifs that assemble into a functional five-bladed β-propeller, and a likely route for conversion into the more complex, extant single chain fusion. Interestingly, although sequence diversification destabilized five-motif fusions, it also destabilized aggregation-prone intermediates, increasing the level of functional protein in vivo.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  beta-propeller; protein fold; repeat protein structure; sequence evolution

Mesh:

Substances:

Year:  2016        PMID: 26971075      PMCID: PMC4911255          DOI: 10.1016/j.tibs.2016.02.010

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  12 in total

1.  The C-terminal domain of DNA gyrase A adopts a DNA-bending beta-pinwheel fold.

Authors:  Kevin D Corbett; Ryan K Shultzaberger; James M Berger
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-03       Impact factor: 11.205

2.  Experimental support for the evolution of symmetric protein architecture from a simple peptide motif.

Authors:  Jihun Lee; Michael Blaber
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-20       Impact factor: 11.205

3.  Structural basis of Wnt signaling inhibition by Dickkopf binding to LRP5/6.

Authors:  Victoria E Ahn; Matthew Ling-Hon Chu; Hee-Jung Choi; Denise Tran; Arie Abo; William I Weis
Journal:  Dev Cell       Date:  2011-10-13       Impact factor: 12.270

4.  Structure of DDB1 in complex with a paramyxovirus V protein: viral hijack of a propeller cluster in ubiquitin ligase.

Authors:  Ti Li; Xiujuan Chen; Kenneth C Garbutt; Pengbo Zhou; Ning Zheng
Journal:  Cell       Date:  2006-01-13       Impact factor: 41.582

5.  Predicting coupling limits from an experimentally determined energy landscape.

Authors:  Timothy O Street; Christina M Bradley; Doug Barrick
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-14       Impact factor: 11.205

6.  Computational design of a self-assembling symmetrical β-propeller protein.

Authors:  Arnout R D Voet; Hiroki Noguchi; Christine Addy; David Simoncini; Daiki Terada; Satoru Unzai; Sam-Yong Park; Kam Y J Zhang; Jeremy R H Tame
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-06       Impact factor: 11.205

7.  Evolution of increased complexity in a molecular machine.

Authors:  Gregory C Finnigan; Victor Hanson-Smith; Tom H Stevens; Joseph W Thornton
Journal:  Nature       Date:  2012-01-09       Impact factor: 49.962

Review 8.  Folding the proteome.

Authors:  Esther Braselmann; Julie L Chaney; Patricia L Clark
Journal:  Trends Biochem Sci       Date:  2013-06-11       Impact factor: 13.807

9.  Single-molecule fluorescence reveals sequence-specific misfolding in multidomain proteins.

Authors:  Madeleine B Borgia; Alessandro Borgia; Robert B Best; Annette Steward; Daniel Nettels; Bengt Wunderlich; Benjamin Schuler; Jane Clarke
Journal:  Nature       Date:  2011-05-29       Impact factor: 49.962

10.  De Novo Evolutionary Emergence of a Symmetrical Protein Is Shaped by Folding Constraints.

Authors:  Robert G Smock; Itamar Yadid; Orly Dym; Jane Clarke; Dan S Tawfik
Journal:  Cell       Date:  2016-01-21       Impact factor: 41.582

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  2 in total

1.  Influence of circular permutations on the structure and stability of a six-fold circular symmetric designer protein.

Authors:  Bram Mylemans; Hiroki Noguchi; Els Deridder; Eveline Lescrinier; Jeremy R H Tame; Arnout R D Voet
Journal:  Protein Sci       Date:  2020-10-16       Impact factor: 6.725

2.  New Insights into Molecular Organization of Human Neuraminidase-1: Transmembrane Topology and Dimerization Ability.

Authors:  Pascal Maurice; Stéphanie Baud; Olga V Bocharova; Eduard V Bocharov; Andrey S Kuznetsov; Charlotte Kawecki; Olivier Bocquet; Beatrice Romier; Laetitia Gorisse; Maxime Ghirardi; Laurent Duca; Sébastien Blaise; Laurent Martiny; Manuel Dauchez; Roman G Efremov; Laurent Debelle
Journal:  Sci Rep       Date:  2016-12-05       Impact factor: 4.379

  2 in total

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