Literature DB >> 26968612

Redefining Signaling Pathways with an Expanding Single-Cell Toolbox.

Suzanne Gaudet1, Kathryn Miller-Jensen2.   

Abstract

Genetically identical cells respond heterogeneously to uniform environmental stimuli. Consequently, investigating the signaling networks that control these cell responses using 'average' bulk cell measurements can obscure underlying mechanisms and misses information emerging from cell-to-cell variability. Here we review recent technological advances including live-cell fluorescence imaging-based approaches and microfluidic devices that enable measurements of signaling networks, dynamics, and responses in single cells. We discuss how these single-cell tools have uncovered novel mechanistic insights for canonical signaling pathways that control cell proliferation (ERK), DNA-damage responses (p53), and innate immune and stress responses (NF-κB). Future improvements in throughput and multiplexing, analytical pipelines, and in vivo applicability will all significantly expand the biological information gained from single-cell measurements of signaling pathways.
Copyright © 2016. Published by Elsevier Ltd.

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Year:  2016        PMID: 26968612      PMCID: PMC4958913          DOI: 10.1016/j.tibtech.2016.02.009

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  71 in total

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Review 3.  Optogenetic control of intracellular signaling pathways.

Authors:  Kai Zhang; Bianxiao Cui
Journal:  Trends Biotechnol       Date:  2014-12-17       Impact factor: 19.536

Review 4.  Specificity of receptor tyrosine kinase signaling: transient versus sustained extracellular signal-regulated kinase activation.

Authors:  C J Marshall
Journal:  Cell       Date:  1995-01-27       Impact factor: 41.582

5.  Rapid blue-light-mediated induction of protein interactions in living cells.

Authors:  Matthew J Kennedy; Robert M Hughes; Leslie A Peteya; Joel W Schwartz; Michael D Ehlers; Chandra L Tucker
Journal:  Nat Methods       Date:  2010-10-31       Impact factor: 28.547

6.  Intercellular propagation of extracellular signal-regulated kinase activation revealed by in vivo imaging of mouse skin.

Authors:  Toru Hiratsuka; Yoshihisa Fujita; Honda Naoki; Kazuhiro Aoki; Yuji Kamioka; Michiyuki Matsuda
Journal:  Elife       Date:  2015-02-10       Impact factor: 8.140

7.  In vivo cell-cycle profiling in xenograft tumors by quantitative intravital microscopy.

Authors:  Deepak R Chittajallu; Stefan Florian; Rainer H Kohler; Yoshiko Iwamoto; James D Orth; Ralph Weissleder; Gaudenz Danuser; Timothy J Mitchison
Journal:  Nat Methods       Date:  2015-04-13       Impact factor: 28.547

8.  Cytometry-based single-cell analysis of intact epithelial signaling reveals MAPK activation divergent from TNF-α-induced apoptosis in vivo.

Authors:  Alan J Simmons; Amrita Banerjee; Eliot T McKinley; Cherie' R Scurrah; Charles A Herring; Leslie S Gewin; Ryota Masuzaki; Seth J Karp; Jeffrey L Franklin; Michael J Gerdes; Jonathan M Irish; Robert J Coffey; Ken S Lau
Journal:  Mol Syst Biol       Date:  2015-10-30       Impact factor: 11.429

9.  Frequency modulation of ERK activation dynamics rewires cell fate.

Authors:  Hyunryul Ryu; Minhwan Chung; Maciej Dobrzyński; Dirk Fey; Yannick Blum; Sung Sik Lee; Matthias Peter; Boris N Kholodenko; Noo Li Jeon; Olivier Pertz
Journal:  Mol Syst Biol       Date:  2015-11-27       Impact factor: 11.429

10.  Paracrine communication maximizes cellular response fidelity in wound signaling.

Authors:  L Naomi Handly; Anna Pilko; Roy Wollman
Journal:  Elife       Date:  2015-10-08       Impact factor: 8.140

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  19 in total

1.  Cyclic Immunofluorescence (CycIF), A Highly Multiplexed Method for Single-cell Imaging.

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2.  Single-cell quantification of the concentrations and dissociation constants of endogenous proteins.

Authors:  Akira T Komatsubara; Yuhei Goto; Yohei Kondo; Michiyuki Matsuda; Kazuhiro Aoki
Journal:  J Biol Chem       Date:  2019-02-09       Impact factor: 5.157

3.  Carrier-assisted One-pot Sample Preparation for Targeted Proteomics Analysis of Small Numbers of Human Cells.

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Journal:  J Vis Exp       Date:  2020-11-06       Impact factor: 1.355

Review 4.  Determining the Limitations and Benefits of Noise in Gene Regulation and Signal Transduction through Single Cell, Microscopy-Based Analysis.

Authors:  Marie D Harton; Eric Batchelor
Journal:  J Mol Biol       Date:  2017-03-11       Impact factor: 5.469

5.  Short-term cellular memory tunes the signaling responses of the chemokine receptor CXCR4.

Authors:  Phillip C Spinosa; Brock A Humphries; Daniela Lewin Mejia; Johanna M Buschhaus; Jennifer J Linderman; Gary D Luker; Kathryn E Luker
Journal:  Sci Signal       Date:  2019-07-09       Impact factor: 8.192

6.  Quantitative profiling of innate immune activation by viral infection in single cells.

Authors:  Andrea C Timm; Jay W Warrick; John Yin
Journal:  Integr Biol (Camb)       Date:  2017-09-18       Impact factor: 2.192

Review 7.  Engineering Approaches to Study Cellular Decision Making.

Authors:  Pamela K Kreeger; Laura E Strong; Kristyn S Masters
Journal:  Annu Rev Biomed Eng       Date:  2018-01-12       Impact factor: 9.590

8.  Fold-Change Detection of NF-κB at Target Genes with Different Transcript Outputs.

Authors:  Victor C Wong; Shibin Mathew; Ramesh Ramji; Suzanne Gaudet; Kathryn Miller-Jensen
Journal:  Biophys J       Date:  2019-01-12       Impact factor: 4.033

9.  Cell-Cycle-Dependent ERK Signaling Dynamics Direct Fate Specification in the Mammalian Preimplantation Embryo.

Authors:  Michael J Pokrass; Kathleen A Ryan; Tianchi Xin; Brittany Pielstick; Winston Timp; Valentina Greco; Sergi Regot
Journal:  Dev Cell       Date:  2020-10-21       Impact factor: 12.270

10.  Biological signal generators: integrating synthetic biology tools and in silico control.

Authors:  Taylor D Scott; Kieran Sweeney; Megan N McClean
Journal:  Curr Opin Syst Biol       Date:  2019-02-27
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