Literature DB >> 26965742

Whole genome sequence of Pantoea ananatis R100, an antagonistic bacterium isolated from rice seed.

Liwen Wu1, Ruifang Liu2, Yaofang Niu1, Haiyan Lin2, Weijun Ye1, Longbiao Guo3, Xingming Hu4.   

Abstract

Pantoea ananatis is a group of bacteria, which was first reported as plant pathogen. Recently, several papers also described its biocontrol ability. In 2003, P. ananatis R100, which showed strong antagonism against several plant pathogens, was isolated from rice seeds. In this study, whole genome sequence of this strain was determined by SMRT Cell technology. The total genome size of R100 is 4,857,861bp with 4659 coding genes (CDS), 82 tRNAs and 22 rRNAs. The genome sequence of R100 may shed a light on the research of antagonism P. ananatis.
Copyright © 2016 The Authors. Published by Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Calicheamicin; Oxazolomycin; Pacbio; Pantoea ananatis; Secondary metabolism

Mesh：

Substances：

Year:  2016        PMID： 26965742     DOI： 10.1016/j.jbiotec.2016.03.007

Source DB:  PubMed          Journal:  J Biotechnol        ISSN： 0168-1656            Impact factor:   3.307


  5 in total

1.  Core Microbiome of Medicinal Plant Salvia miltiorrhiza Seed: A Rich Reservoir of Beneficial Microbes for Secondary Metabolism?

Authors:  Haimin Chen; Hongxia Wu; Bin Yan; Hongguang Zhao; Fenghua Liu; Haihua Zhang; Qing Sheng; Fang Miao; Zongsuo Liang
Journal:  Int J Mol Sci       Date:  2018-02-27       Impact factor: 5.923

2.  Phylogenomic, Pan-genomic, Pathogenomic and Evolutionary Genomic Insights into the Agronomically Relevant Enterobacteria Pantoea ananatis and Pantoea stewartii.

Authors:  Pieter De Maayer; Habibu Aliyu; Surendra Vikram; Jochen Blom; Brion Duffy; Don A Cowan; Theo H M Smits; Stephanus N Venter; Teresa A Coutinho
Journal:  Front Microbiol       Date:  2017-09-14       Impact factor: 5.640

3.  Genome Sequence of Pantoea ananatis SGAir0210, Isolated from Outdoor Air in Singapore.

Authors:  Irvan Luhung; Ana Carolina M Junqueira; Akira Uchida; Rikky W Purbojati; James N I Houghton; Caroline Chénard; Anthony Wong; Megan E Clare; Kavita K Kushwaha; Deepa Panicker; Alexander Putra; Nicolas E Gaultier; Balakrishnan N V Premkrishnan; Cassie E Heinle; Vineeth Kodengil Vettath; Daniela I Drautz-Moses; Stephan C Schuster
Journal:  Genome Announc       Date:  2018-07-05

Review 4.  Microbial Production Potential of Pantoea ananatis: From Amino Acids to Secondary Metabolites.

Authors:  Yoshihiro Usuda; Yousuke Nishio; Gen Nonaka; Yoshihiko Hara
Journal:  Microorganisms       Date:  2022-05-31

Review 5.  Beneficial Effect and Potential Risk of Pantoea on Rice Production.

Authors:  Luqiong Lv; Jinyan Luo; Temoor Ahmed; Haitham E M Zaki; Ye Tian; Muhammad Shafiq Shahid; Jianping Chen; Bin Li
Journal:  Plants (Basel)       Date:  2022-10-04
  5 in total

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