Literature DB >> 26964643

Molecular Dynamics of Dimethyldioxirane C-H Oxidation.

Zhongyue Yang1, Peiyuan Yu1, K N Houk1.   

Abstract

We report molecular dynamics simulations of the reaction of dimethyldioxirane (DMDO) with isobutane. The reaction involves hydrogen atom abstraction in the transition state, and trajectories branch to the oxygen rebound pathway, which gives tert-butanol and acetone, or a separated radical pair. In the gas phase, only 10% of the reactive trajectories undergo the oxygen rebound pathway, but this increases to 90% in simulations in an implicit acetone solvent (SMD) because the oxygen rebound becomes barrierless in solution. Short-lived diradical species were observed in the oxygen rebound trajectories. The time gap between C-H bond-breaking and C-O bond formation ranges from 30 to 150 fs, close to the <200 fs lifetime of radical pairs from DMDO hydroxylation of trans-1-phenyl-2-ethylcyclopropane measured by Newcomb.

Entities:  

Year:  2016        PMID: 26964643     DOI: 10.1021/jacs.6b01028

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  7 in total

1.  Dynamics and the Regiochemistry of Nitration of Toluene.

Authors:  Yexenia Nieves-Quinones; Daniel A Singleton
Journal:  J Am Chem Soc       Date:  2016-11-10       Impact factor: 15.419

2.  Controlling Selectivity by Controlling Energy Partitioning in a Thermal Reaction in Solution.

Authors:  Hiroaki Kurouchi; Ivonne L Andujar-De Sanctis; Daniel A Singleton
Journal:  J Am Chem Soc       Date:  2016-10-27       Impact factor: 15.419

3.  Influence of water and enzyme SpnF on the dynamics and energetics of the ambimodal [6+4]/[4+2] cycloaddition.

Authors:  Zhongyue Yang; Song Yang; Peiyuan Yu; Yanwei Li; Charles Doubleday; Jiyong Park; Ashay Patel; Byung-Sun Jeon; William K Russell; Hung-Wen Liu; David H Russell; Kendall N Houk
Journal:  Proc Natl Acad Sci U S A       Date:  2018-01-18       Impact factor: 11.205

4.  How Many Conformations of Enzymes Should Be Sampled for DFT/MM Calculations? A Case Study of Fluoroacetate Dehalogenase.

Authors:  Yanwei Li; Ruiming Zhang; Likai Du; Qingzhu Zhang; Wenxing Wang
Journal:  Int J Mol Sci       Date:  2016-08-20       Impact factor: 5.923

5.  A Reaction-Induced Localization of Spin Density Enables Thermal C-H Bond Activation of Methane by Pristine FeC4.

Authors:  Caiyun Geng; Jilai Li; Thomas Weiske; Helmut Schwarz
Journal:  Chemistry       Date:  2019-08-13       Impact factor: 5.236

6.  Low dimensional representations along intrinsic reaction coordinates and molecular dynamics trajectories using interatomic distance matrices.

Authors:  Stephanie R Hare; Lars A Bratholm; David R Glowacki; Barry K Carpenter
Journal:  Chem Sci       Date:  2019-09-18       Impact factor: 9.825

7.  Rapid and Accurate Estimation of Activation Free Energy in Hydrogen Atom Transfer-Based C-H Activation Reactions: From Empirical Model to Artificial Neural Networks.

Authors:  Siqi Ma; Shipeng Wang; Jiawei Cao; Fengjiao Liu
Journal:  ACS Omega       Date:  2022-09-20
  7 in total

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