Literature DB >> 26958215

Representation of Functional Status Concepts from Clinical Documents and Social Media Sources by Standard Terminologies.

Jinqiu Kuang1, April F Mohanty2, V H Rashmi1, Charlene R Weir3, Bruce E Bray1, Qing Zeng-Treitler3.   

Abstract

Patient-reported functional status is widely recognized as an important patient-centered outcome that adds value to medical care, research, and quality improvement. Functional status outcomes are, however, not routinely or uniformly collected in the medical record, except in certain small patient populations (e.g. geriatrics, nursing home residents). To utilize patient reported functional status for clinical research and practice, we manually collected 2,763 terms from clinical records and social media sites and modeled them on the widely used Short Form-36 Health Survey. We then examined the coverage of the Unified Medical Language System (UMLS) for these functional status terms through automated mapping. Most terms (85.9%) did not have exact matches in the UMLS. The partial matches were prevalent, however, they typically did not capture the terms' exact semantics. Our study suggests that there is a need to extend existing standard terminologies to incorporate functional status terms used by patients and clinicians.

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Year:  2015        PMID: 26958215      PMCID: PMC4765559     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  20 in total

1.  Functional status: the six vital sign.

Authors:  A S Bierman
Journal:  J Gen Intern Med       Date:  2001-11       Impact factor: 5.128

Review 2.  Assessment of functional capacity in clinical and research applications: An advisory from the Committee on Exercise, Rehabilitation, and Prevention, Council on Clinical Cardiology, American Heart Association.

Authors:  J L Fleg; I L Piña; G J Balady; B R Chaitman; B Fletcher; C Lavie; M C Limacher; R A Stein; M Williams; T Bazzarre
Journal:  Circulation       Date:  2000-09-26       Impact factor: 29.690

3.  Evaluation of the UMLS as a terminology and knowledge resource for biomedical informatics.

Authors:  Olivier Bodenreider; Joyce A Mitchell; Alexa T McCray
Journal:  Proc AMIA Symp       Date:  2002

4.  A term extraction tool for expanding content in the domain of functioning, disability, and health: proof of concept.

Authors:  Marcelline R Harris; Guergana K Savova; Thomas M Johnson; Christopher G Chute
Journal:  J Biomed Inform       Date:  2003 Aug-Oct       Impact factor: 6.317

5.  A corpus driven approach applying the "frame semantic" method for modeling functional status terminology.

Authors:  Alexander P Ruggieri; Serguei V Pakhomov; Christopher G Chute
Journal:  Stud Health Technol Inform       Date:  2004

6.  Automated extraction of the Barthel Index from clinical texts.

Authors:  Phan Giang; Allison Williams; Lisa Argyros
Journal:  AMIA Annu Symp Proc       Date:  2013-11-16

7.  Representation by standard terminologies of health status concepts contained in two health status assessment instruments used in rheumatic disease management.

Authors:  A P Ruggieri; P Elkin; C G Chute
Journal:  Proc AMIA Symp       Date:  2000

8.  Sophia: A Expedient UMLS Concept Extraction Annotator.

Authors:  Guy Divita; Qing T Zeng; Adi V Gundlapalli; Scott Duvall; Jonathan Nebeker; Matthew H Samore
Journal:  AMIA Annu Symp Proc       Date:  2014-11-14

9.  Functional status determines postoperative outcomes in elderly patients undergoing hepatic resections.

Authors:  Sebastian G de la Fuente; Kyla M Bennett; John E Scarborough
Journal:  J Surg Oncol       Date:  2013-04-12       Impact factor: 3.454

10.  The effects of antihypertensive therapy on the quality of life.

Authors:  S H Croog; S Levine; M A Testa; B Brown; C J Bulpitt; C D Jenkins; G L Klerman; G H Williams
Journal:  N Engl J Med       Date:  1986-06-26       Impact factor: 91.245

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  6 in total

1.  Identification and Use of Frailty Indicators from Text to Examine Associations with Clinical Outcomes Among Patients with Heart Failure.

Authors:  Yijun Shao; April F Mohanty; Ali Ahmed; Charlene R Weir; Bruce E Bray; Rashmee U Shah; Douglas Redd; Qing Zeng-Treitler
Journal:  AMIA Annu Symp Proc       Date:  2017-02-10

2.  A comprehensive study of mobility functioning information in clinical notes: Entity hierarchy, corpus annotation, and sequence labeling.

Authors:  Thanh Thieu; Jonathan Camacho Maldonado; Pei-Shu Ho; Min Ding; Alex Marr; Diane Brandt; Denis Newman-Griffis; Ayah Zirikly; Leighton Chan; Elizabeth Rasch
Journal:  Int J Med Inform       Date:  2020-12-24       Impact factor: 4.046

3.  Ambiguity in medical concept normalization: An analysis of types and coverage in electronic health record datasets.

Authors:  Denis Newman-Griffis; Guy Divita; Bart Desmet; Ayah Zirikly; Carolyn P Rosé; Eric Fosler-Lussier
Journal:  J Am Med Inform Assoc       Date:  2021-03-01       Impact factor: 4.497

4.  Characterizing Functional Health Status of Surgical Patients in Clinical Notes.

Authors:  Steven J Skube; Elizabeth A Lindemann; Elliot G Arsoniadis; Mari Akre; Elizabeth C Wick; Genevieve B Melton
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2018-05-18

5.  Broadening horizons: the case for capturing function and the role of health informatics in its use.

Authors:  Denis Newman-Griffis; Julia Porcino; Ayah Zirikly; Thanh Thieu; Jonathan Camacho Maldonado; Pei-Shu Ho; Min Ding; Leighton Chan; Elizabeth Rasch
Journal:  BMC Public Health       Date:  2019-10-15       Impact factor: 3.295

6.  Automated Coding of Under-Studied Medical Concept Domains: Linking Physical Activity Reports to the International Classification of Functioning, Disability, and Health.

Authors:  Denis Newman-Griffis; Eric Fosler-Lussier
Journal:  Front Digit Health       Date:  2021-03-10
  6 in total

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