Literature DB >> 26958170

Similarity-Based Recommendation of New Concepts to a Terminology.

Praveen Chandar1, Anil Yaman1, Julia Hoxha1, Zhe He1, Chunhua Weng1.   

Abstract

Terminologies can suffer from poor concept coverage due to delays in addition of new concepts. This study tests a similarity-based approach to recommending concepts from a text corpus to a terminology. Our approach involves extraction of candidate concepts from a given text corpus, which are represented using a set of features. The model learns the important features to characterize a concept and recommends new concepts to a terminology. Further, we propose a cost-effective evaluation methodology to estimate the effectiveness of terminology enrichment methods. To test our methodology, we use the clinical trial eligibility criteria free-text as an example text corpus to recommend concepts for SNOMED CT. We computed precision at various rank intervals to measure the performance of the methods. Results indicate that our automated algorithm is an effective method for concept recommendation.

Mesh:

Year:  2015        PMID: 26958170      PMCID: PMC4765685     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  10 in total

1.  Understanding terminological systems. I: Terminology and typology.

Authors:  N F de Keizer; A Abu-Hanna; J H Zwetsloot-Schonk
Journal:  Methods Inf Med       Date:  2000-03       Impact factor: 2.176

2.  Effectiveness of lexico-syntactic pattern matching for ontology enrichment with clinical documents.

Authors:  K Liu; W W Chapman; G Savova; C G Chute; N Sioutos; R S Crowley
Journal:  Methods Inf Med       Date:  2010-11-08       Impact factor: 2.176

Review 3.  Desiderata for controlled medical vocabularies in the twenty-first century.

Authors:  J J Cimino
Journal:  Methods Inf Med       Date:  1998-11       Impact factor: 2.176

4.  A survey of SNOMED CT direct users, 2010: impressions and preferences regarding content and quality.

Authors:  Gai Elhanan; Yehoshua Perl; James Geller
Journal:  J Am Med Inform Assoc       Date:  2011-08-11       Impact factor: 4.497

5.  A comparative analysis of the density of the SNOMED CT conceptual content for semantic harmonization.

Authors:  Zhe He; James Geller; Yan Chen
Journal:  Artif Intell Med       Date:  2015-04-02       Impact factor: 5.326

6.  Formative evaluation of ontology learning methods for entity discovery by using existing ontologies as reference standards.

Authors:  K Liu; K J Mitchell; W W Chapman; G K Savova; N Sioutos; D L Rubin; R S Crowley
Journal:  Methods Inf Med       Date:  2013-05-13       Impact factor: 2.176

7.  Evaluation of the content coverage of SNOMED CT: ability of SNOMED clinical terms to represent clinical problem lists.

Authors:  Peter L Elkin; Steven H Brown; Casey S Husser; Brent A Bauer; Dietlind Wahner-Roedler; S Trent Rosenbloom; Ted Speroff
Journal:  Mayo Clin Proc       Date:  2006-06       Impact factor: 7.616

8.  Using SNOMED-CT to encode summary level data - a corpus analysis.

Authors:  Hongfang Liu; Kavishwar Wagholikar; Stephen Tze-Inn Wu
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2012-03-19

9.  BioPortal: ontologies and integrated data resources at the click of a mouse.

Authors:  Natalya F Noy; Nigam H Shah; Patricia L Whetzel; Benjamin Dai; Michael Dorf; Nicholas Griffith; Clement Jonquet; Daniel L Rubin; Margaret-Anne Storey; Christopher G Chute; Mark A Musen
Journal:  Nucleic Acids Res       Date:  2009-05-29       Impact factor: 16.971

10.  Semantic analysis of SNOMED CT for a post-coordinated database of histopathology findings.

Authors:  Walter S Campbell; James R Campbell; William W West; James C McClay; Steven H Hinrichs
Journal:  J Am Med Inform Assoc       Date:  2014-05-15       Impact factor: 4.497

  10 in total
  3 in total

1.  Extended Analysis of Topological-Pattern-Based Ontology Enrichment.

Authors:  Zhe He; Vipina Kuttichi Keloth; Yan Chen; James Geller
Journal:  Proceedings (IEEE Int Conf Bioinformatics Biomed)       Date:  2019-01-24

2.  Enriching consumer health vocabulary through mining a social Q&A site: A similarity-based approach.

Authors:  Zhe He; Zhiwei Chen; Sanghee Oh; Jinghui Hou; Jiang Bian
Journal:  J Biomed Inform       Date:  2017-03-27       Impact factor: 6.317

3.  Consumers' Use of UMLS Concepts on Social Media: Diabetes-Related Textual Data Analysis in Blog and Social Q&A Sites.

Authors:  Min Sook Park; Zhe He; Zhiwei Chen; Sanghee Oh; Jiang Bian
Journal:  JMIR Med Inform       Date:  2016-11-24
  3 in total

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