Literature DB >> 26958160

OpenHealth Platform for Interactive Contextualization of Population Health Open Data.

Jonas S Almeida1, Janos Hajagos1, Ivan Crnosija1, Tahsin Kurc1, Mary Saltz2, Joel Saltz1.   

Abstract

The financial incentives for data science applications leading to improved health outcomes, such as DSRIP (bit.ly/dsrip), are well-aligned with the broad adoption of Open Data by State and Federal agencies. This creates entirely novel opportunities for analytical applications that make exclusive use of the pervasive Web Computing platform. The framework described here explores this new avenue to contextualize Health data in a manner that relies exclusively on the native JavaScript interpreter and data processing resources of the ubiquitous Web Browser. The OpenHealth platform is made publicly available, and is publicly hosted with version control and open source, at https://github.com/mathbiol/openHealth. The different data/analytics workflow architectures explored are accompanied with live applications ranging from DSRIP, such as Hospital Inpatient Prevention Quality Indicators at http://bit.ly/pqiSuffolk, to The Cancer Genome Atlas (TCGA) as illustrated by http://bit.ly/tcgascopeGBM.

Entities:  

Mesh:

Year:  2015        PMID: 26958160      PMCID: PMC4765591     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  8 in total

1.  Escaping the EHR trap--the future of health IT.

Authors:  Kenneth D Mandl; Isaac S Kohane
Journal:  N Engl J Med       Date:  2012-06-14       Impact factor: 91.245

2.  Computer science. Beyond the data deluge.

Authors:  Gordon Bell; Tony Hey; Alex Szalay
Journal:  Science       Date:  2009-03-06       Impact factor: 47.728

3.  Coming into focus: computational pathology as the new big data microscope.

Authors:  Kevin A Roth; Jonas S Almeida
Journal:  Am J Pathol       Date:  2015-03       Impact factor: 4.307

4.  The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data.

Authors:  Ethan Cerami; Jianjiong Gao; Ugur Dogrusoz; Benjamin E Gross; Selcuk Onur Sumer; Bülent Arman Aksoy; Anders Jacobsen; Caitlin J Byrne; Michael L Heuer; Erik Larsson; Yevgeniy Antipin; Boris Reva; Arthur P Goldberg; Chris Sander; Nikolaus Schultz
Journal:  Cancer Discov       Date:  2012-05       Impact factor: 39.397

5.  Fractal MapReduce decomposition of sequence alignment.

Authors:  Jonas S Almeida; Alexander Grüneberg; Wolfgang Maass; Susana Vinga
Journal:  Algorithms Mol Biol       Date:  2012-05-02       Impact factor: 1.405

6.  ImageJS: Personalized, participated, pervasive, and reproducible image bioinformatics in the web browser.

Authors:  Jonas S Almeida; Egiebade E Iriabho; Vijaya L Gorrepati; Sean R Wilkinson; Alexander Grüneberg; David E Robbins; James R Hackney
Journal:  J Pathol Inform       Date:  2012-07-20

7.  A self-updating road map of The Cancer Genome Atlas.

Authors:  David E Robbins; Alexander Grüneberg; Helena F Deus; Murat M Tanik; Jonas S Almeida
Journal:  Bioinformatics       Date:  2013-04-17       Impact factor: 6.937

8.  QMachine: commodity supercomputing in web browsers.

Authors:  Sean R Wilkinson; Jonas S Almeida
Journal:  BMC Bioinformatics       Date:  2014-06-09       Impact factor: 3.169

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.