Literature DB >> 26953651

Estimation from moments measurements for amyloid depolymerisation.

Aurora Armiento1, Marie Doumic2, Philippe Moireau3, H Rezaei4.   

Abstract

Estimating reaction rates and size distributions of protein polymers is an important step for understanding the mechanisms of protein misfolding and aggregation, a key feature for amyloid diseases. This study aims at setting this framework problem when the experimental measurements consist in the time-dynamics of a moment of the population (i.e. for instance the total polymerised mass, as in Thioflavin T measurements, or the second moment measured by Static Light Scattering). We propose a general methodology, and we solve the problem theoretically and numerically in the case of a depolymerising system. We then apply our method to experimental data of depolymerising oligomers, and conclude that smaller aggregates of ovPrP protein should be more stable than larger ones. This has an important biological implication, since it is commonly admitted that small oligomers constitute the most cytotoxic species during prion misfolding process.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Amyloid; Data assimilation; Inverse problem; Oligomer; Prion; Protein stability; State estimation; Transport equation

Mesh:

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Year:  2016        PMID: 26953651     DOI: 10.1016/j.jtbi.2016.02.037

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  1 in total

1.  The mechanism of monomer transfer between two structurally distinct PrP oligomers.

Authors:  Aurora Armiento; Philippe Moireau; Davy Martin; Nad'a Lepejova; Marie Doumic; Human Rezaei
Journal:  PLoS One       Date:  2017-07-26       Impact factor: 3.240

  1 in total

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