Literature DB >> 26951682

Deciphering ocean carbon in a changing world.

Mary Ann Moran1, Elizabeth B Kujawinski2, Aron Stubbins3, Rob Fatland4, Lihini I Aluwihare5, Alison Buchan6, Byron C Crump7, Pieter C Dorrestein8, Sonya T Dyhrman9, Nancy J Hess10, Bill Howe11, Krista Longnecker12, Patricia M Medeiros13, Jutta Niggemann14, Ingrid Obernosterer15, Daniel J Repeta12, Jacob R Waldbauer16.   

Abstract

Dissolved organic matter (DOM) in the oceans is one of the largest pools of reduced carbon on Earth, comparable in size to the atmospheric CO2 reservoir. A vast number of compounds are present in DOM, and they play important roles in all major element cycles, contribute to the storage of atmospheric CO2 in the ocean, support marine ecosystems, and facilitate interactions between organisms. At the heart of the DOM cycle lie molecular-level relationships between the individual compounds in DOM and the members of the ocean microbiome that produce and consume them. In the past, these connections have eluded clear definition because of the sheer numerical complexity of both DOM molecules and microorganisms. Emerging tools in analytical chemistry, microbiology, and informatics are breaking down the barriers to a fuller appreciation of these connections. Here we highlight questions being addressed using recent methodological and technological developments in those fields and consider how these advances are transforming our understanding of some of the most important reactions of the marine carbon cycle.

Entities:  

Keywords:  cyberinfrastructure; dissolved organic matter; marine microbes

Mesh:

Substances:

Year:  2016        PMID: 26951682      PMCID: PMC4812754          DOI: 10.1073/pnas.1514645113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  99 in total

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Journal:  Nat Rev Microbiol       Date:  2007-10       Impact factor: 60.633

2.  Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom.

Authors:  Hanno Teeling; Bernhard M Fuchs; Dörte Becher; Christine Klockow; Antje Gardebrecht; Christin M Bennke; Mariette Kassabgy; Sixing Huang; Alexander J Mann; Jost Waldmann; Marc Weber; Anna Klindworth; Andreas Otto; Jana Lange; Jörg Bernhardt; Christine Reinsch; Michael Hecker; Jörg Peplies; Frank D Bockelmann; Ulrich Callies; Gunnar Gerdts; Antje Wichels; Karen H Wiltshire; Frank Oliver Glöckner; Thomas Schweder; Rudolf Amann
Journal:  Science       Date:  2012-05-04       Impact factor: 47.728

3.  Bacterivory and herbivory: Key roles of phagotrophic protists in pelagic food webs.

Authors:  E B Sherr; B F Sherr
Journal:  Microb Ecol       Date:  1994-09       Impact factor: 4.552

4.  Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea.

Authors:  Sarah M Sowell; Larry J Wilhelm; Angela D Norbeck; Mary S Lipton; Carrie D Nicora; Douglas F Barofsky; Craig A Carlson; Richard D Smith; Stephen J Giovanonni
Journal:  ISME J       Date:  2008-09-04       Impact factor: 10.302

5.  Detection of glycolate oxidase gene glcD diversity among cultured and environmental marine bacteria.

Authors:  W W Y Lau; E V Armbrust
Journal:  Environ Microbiol       Date:  2006-10       Impact factor: 5.491

6.  SAR11 marine bacteria require exogenous reduced sulphur for growth.

Authors:  H James Tripp; Joshua B Kitner; Michael S Schwalbach; John W H Dacey; Larry J Wilhelm; Stephen J Giovannoni
Journal:  Nature       Date:  2008-03-12       Impact factor: 49.962

7.  Molecular dissection of bacterial acrylate catabolism--unexpected links with dimethylsulfoniopropionate catabolism and dimethyl sulfide production.

Authors:  Jonathan D Todd; Andrew R J Curson; Nefeli Nikolaidou-Katsaraidou; Charles A Brearley; Nicholas J Watmough; Yohan Chan; Philip C B Page; Lei Sun; Andrew W B Johnston
Journal:  Environ Microbiol       Date:  2009-10-05       Impact factor: 5.491

Review 8.  Get the most out of your metagenome: computational analysis of environmental sequence data.

Authors:  Jeroen Raes; Konrad Ulrich Foerstner; Peer Bork
Journal:  Curr Opin Microbiol       Date:  2007-10-23       Impact factor: 7.934

Review 9.  Bioinformatics: the next frontier of metabolomics.

Authors:  Caroline H Johnson; Julijana Ivanisevic; H Paul Benton; Gary Siuzdak
Journal:  Anal Chem       Date:  2014-11-20       Impact factor: 6.986

10.  High abundance of virulence gene homologues in marine bacteria.

Authors:  Olof P Persson; Jarone Pinhassi; Lasse Riemann; Britt-Inger Marklund; Mikael Rhen; Staffan Normark; José M González; Ake Hagström
Journal:  Environ Microbiol       Date:  2009-02-04       Impact factor: 5.491

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  48 in total

1.  Bacterial transcriptome remodeling during sequential co-culture with a marine dinoflagellate and diatom.

Authors:  Marine Landa; Andrew S Burns; Selena J Roth; Mary Ann Moran
Journal:  ISME J       Date:  2017-07-21       Impact factor: 10.302

2.  On-Site Analysis of Bacterial Communities of the Ultraoligotrophic South Pacific Gyre.

Authors:  Greta Reintjes; Halina E Tegetmeyer; Miriam Bürgisser; Sandi Orlić; Ivo Tews; Mikhail Zubkov; Daniela Voß; Oliver Zielinski; Christian Quast; Frank Oliver Glöckner; Rudolf Amann; Timothy G Ferdelman; Bernhard M Fuchs
Journal:  Appl Environ Microbiol       Date:  2019-07-01       Impact factor: 4.792

3.  Expression patterns of elemental cycling genes in the Amazon River Plume.

Authors:  Brandon M Satinsky; Christa B Smith; Shalabh Sharma; Marine Landa; Patricia M Medeiros; Victoria J Coles; Patricia L Yager; Byron C Crump; Mary Ann Moran
Journal:  ISME J       Date:  2017-04-07       Impact factor: 10.302

4.  A carbon for every nitrogen.

Authors:  Aron Stubbins
Journal:  Proc Natl Acad Sci U S A       Date:  2016-09-16       Impact factor: 11.205

5.  Accurate Quantification of Laminarin in Marine Organic Matter with Enzymes from Marine Microbes.

Authors:  Stefan Becker; André Scheffel; Martin F Polz; Jan-Hendrik Hehemann
Journal:  Appl Environ Microbiol       Date:  2017-04-17       Impact factor: 4.792

Review 6.  Quorum Sensing and Quorum Quenching in the Phycosphere of Phytoplankton: a Case of Chemical Interactions in Ecology.

Authors:  Jean Luc Rolland; Didier Stien; Sophie Sanchez-Ferandin; Raphaël Lami
Journal:  J Chem Ecol       Date:  2016-11-07       Impact factor: 2.626

7.  Nanomolar Responsiveness of an Anaerobic Degradation Specialist to Alkylphenol Pollutants.

Authors:  Jannes Vagts; Arne Weiten; Sabine Scheve; Kristin Kalvelage; Sebastian Swirski; Lars Wöhlbrand; John Neidhardt; Michael Winklhofer; Ralf Rabus
Journal:  J Bacteriol       Date:  2020-02-11       Impact factor: 3.490

8.  Coordinated gene expression between Trichodesmium and its microbiome over day-night cycles in the North Pacific Subtropical Gyre.

Authors:  Kyle R Frischkorn; Sheean T Haley; Sonya T Dyhrman
Journal:  ISME J       Date:  2018-01-30       Impact factor: 10.302

Review 9.  Metabolome response to anthropogenic contamination on microalgae: a review.

Authors:  Léa Gauthier; Juliette Tison-Rosebery; Soizic Morin; Nicolas Mazzella
Journal:  Metabolomics       Date:  2019-12-21       Impact factor: 4.290

10.  Resource heterogeneity structures aquatic bacterial communities.

Authors:  Mario E Muscarella; Claudia M Boot; Corey D Broeckling; Jay T Lennon
Journal:  ISME J       Date:  2019-05-03       Impact factor: 10.302

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