Literature DB >> 26949187

Bayesian Sparse Regression Analysis Documents the Diversity of Spinal Inhibitory Interneurons.

Mariano I Gabitto1, Ari Pakman2, Jay B Bikoff3, L F Abbott4, Thomas M Jessell3, Liam Paninski5.   

Abstract

Documenting the extent of cellular diversity is a critical step in defining the functional organization of tissues and organs. To infer cell-type diversity from partial or incomplete transcription factor expression data, we devised a sparse Bayesian framework that is able to handle estimation uncertainty and can incorporate diverse cellular characteristics to optimize experimental design. Focusing on spinal V1 inhibitory interneurons, for which the spatial expression of 19 transcription factors has been mapped, we infer the existence of ~50 candidate V1 neuronal types, many of which localize in compact spatial domains in the ventral spinal cord. We have validated the existence of inferred cell types by direct experimental measurement, establishing this Bayesian framework as an effective platform for cell-type characterization in the nervous system and elsewhere.
Copyright © 2016 Elsevier Inc. All rights reserved.

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Year:  2016        PMID: 26949187      PMCID: PMC4831714          DOI: 10.1016/j.cell.2016.01.026

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  50 in total

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4.  Unbiased classification of sensory neuron types by large-scale single-cell RNA sequencing.

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5.  Recurrent inhibition of interneurones monosynaptically activated from group Ia afferents.

Authors:  H Hultborn; E Jankowska; S Lindström
Journal:  J Physiol       Date:  1971-07       Impact factor: 5.182

Review 6.  New insights into the classification and nomenclature of cortical GABAergic interneurons.

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7.  Probabilistic analysis of gene expression measurements from heterogeneous tissues.

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10.  Biomarker discovery in heterogeneous tissue samples -taking the in-silico deconfounding approach.

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  30 in total

1.  Origin and Segmental Diversity of Spinal Inhibitory Interneurons.

Authors:  Lora B Sweeney; Jay B Bikoff; Mariano I Gabitto; Susan Brenner-Morton; Myungin Baek; Jerry H Yang; Esteban G Tabak; Jeremy S Dasen; Christopher R Kintner; Thomas M Jessell
Journal:  Neuron       Date:  2018-01-04       Impact factor: 17.173

Review 2.  Imaging spinal cord activity in behaving animals.

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Journal:  Exp Neurol       Date:  2019-06-06       Impact factor: 5.330

Review 3.  Making sense out of spinal cord somatosensory development.

Authors:  Helen C Lai; Rebecca P Seal; Jane E Johnson
Journal:  Development       Date:  2016-10-01       Impact factor: 6.868

4.  Spinal cord: Interpreting interneuron diversity.

Authors:  Fiona Carr
Journal:  Nat Rev Neurosci       Date:  2016-03-24       Impact factor: 34.870

Review 5.  Molecular mechanisms underlying monosynaptic sensory-motor circuit development in the spinal cord.

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Journal:  Dev Dyn       Date:  2018-01-17       Impact factor: 3.780

6.  Decoding Cell Type Diversity Within the Spinal Cord.

Authors:  Courtney I Dobrott; Anupama Sathyamurthy; Ariel J Levine
Journal:  Curr Opin Physiol       Date:  2018-11-26

Review 7.  Diversity of molecularly defined spinal interneurons engaged in mammalian locomotor pattern generation.

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Journal:  J Neurophysiol       Date:  2017-08-30       Impact factor: 2.714

8.  Spinal Inhibitory Interneuron Diversity Delineates Variant Motor Microcircuits.

Authors:  Jay B Bikoff; Mariano I Gabitto; Andre F Rivard; Estelle Drobac; Timothy A Machado; Andrew Miri; Susan Brenner-Morton; Erica Famojure; Carolyn Diaz; Francisco J Alvarez; George Z Mentis; Thomas M Jessell
Journal:  Cell       Date:  2016-03-03       Impact factor: 41.582

9.  Subtype Diversification and Synaptic Specificity of Stem Cell-Derived Spinal Interneurons.

Authors:  Phuong T Hoang; Joshua I Chalif; Jay B Bikoff; Thomas M Jessell; George Z Mentis; Hynek Wichterle
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10.  Graded Arrays of Spinal and Supraspinal V2a Interneuron Subtypes Underlie Forelimb and Hindlimb Motor Control.

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