Literature DB >> 26946034

Mechanistically Dissecting Autophagy: Insights from In Vitro Reconstitution.

Livia Wilz Brier1, Min Zhang1, Liang Ge2.   

Abstract

Autophagy is a fundamental cellular mechanism responsible for bulk turnover of cytoplasmic components. It is broadly related to many cellular activities, physiological processes, and pathological conditions. Autophagy entails a spatiotemporal interaction between cytosolic factors and membranes that are remodeled to encapsulate autophagic cargo within an autophagosome. Although majority of the factors [autophagy-related gene (Atg) proteins] involved in autophagy have been identified by genetic studies, the mechanism accounting for how these factors act upon the membrane to remodel it and efficiently recruit cargo for degradation is unclear. In vitro reconstitution of several different aspects of autophagy has provided important insights into the understanding of the mechanistic details underlying autophagic membrane remodeling and cargo recruitment. Here, we highlight these efforts toward studying autophagy through in vitro approaches.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  autophagosome; autophagy; in vitro reconstitution; membrane; vesicle

Mesh:

Year:  2016        PMID: 26946034      PMCID: PMC5599101          DOI: 10.1016/j.jmb.2016.02.024

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  115 in total

1.  Mechanism of cargo selection in the cytoplasm to vacuole targeting pathway.

Authors:  Takahiro Shintani; Wei-Pang Huang; Per E Stromhaug; Daniel J Klionsky
Journal:  Dev Cell       Date:  2002-12       Impact factor: 12.270

2.  Spastic paraplegia proteins spastizin and spatacsin mediate autophagic lysosome reformation.

Authors:  Jaerak Chang; Seongju Lee; Craig Blackstone
Journal:  J Clin Invest       Date:  2014-11-03       Impact factor: 14.808

3.  The EM structure of the TRAPPIII complex leads to the identification of a requirement for COPII vesicles on the macroautophagy pathway.

Authors:  Dongyan Tan; Yiying Cai; Juan Wang; Jinzhong Zhang; Shekar Menon; Hui-Ting Chou; Susan Ferro-Novick; Karin M Reinisch; Thomas Walz
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-11       Impact factor: 11.205

4.  SNARE proteins are required for macroautophagy.

Authors:  Usha Nair; Anjali Jotwani; Jiefei Geng; Noor Gammoh; Diana Richerson; Wei-Lien Yen; Janice Griffith; Shanta Nag; Ke Wang; Tyler Moss; Misuzu Baba; James A McNew; Xuejun Jiang; Fulvio Reggiori; Thomas J Melia; Daniel J Klionsky
Journal:  Cell       Date:  2011-07-22       Impact factor: 41.582

5.  The Atg12-Atg5 conjugate has a novel E3-like activity for protein lipidation in autophagy.

Authors:  Takao Hanada; Nobuo N Noda; Yoshinori Satomi; Yoshinobu Ichimura; Yuko Fujioka; Toshifumi Takao; Fuyuhiko Inagaki; Yoshinori Ohsumi
Journal:  J Biol Chem       Date:  2007-11-06       Impact factor: 5.157

6.  Identification of Barkor as a mammalian autophagy-specific factor for Beclin 1 and class III phosphatidylinositol 3-kinase.

Authors:  Qiming Sun; Weiliang Fan; Keling Chen; Xiaojun Ding; She Chen; Qing Zhong
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-02       Impact factor: 11.205

7.  LC3, GABARAP and GATE16 localize to autophagosomal membrane depending on form-II formation.

Authors:  Yukiko Kabeya; Noboru Mizushima; Akitsugu Yamamoto; Satsuki Oshitani-Okamoto; Yoshinori Ohsumi; Tamotsu Yoshimori
Journal:  J Cell Sci       Date:  2004-06-01       Impact factor: 5.285

Review 8.  Atg8: an autophagy-related ubiquitin-like protein family.

Authors:  Tomer Shpilka; Hilla Weidberg; Shmuel Pietrokovski; Zvulun Elazar
Journal:  Genome Biol       Date:  2011-07-27       Impact factor: 13.583

9.  Formation process of autophagosome is traced with Apg8/Aut7p in yeast.

Authors:  T Kirisako; M Baba; N Ishihara; K Miyazawa; M Ohsumi; T Yoshimori; T Noda; Y Ohsumi
Journal:  J Cell Biol       Date:  1999-10-18       Impact factor: 10.539

10.  The HOPS complex mediates autophagosome-lysosome fusion through interaction with syntaxin 17.

Authors:  Peidu Jiang; Taki Nishimura; Yuriko Sakamaki; Eisuke Itakura; Tomohisa Hatta; Tohru Natsume; Noboru Mizushima
Journal:  Mol Biol Cell       Date:  2014-02-19       Impact factor: 4.138

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  5 in total

1.  Autophagosomal Membrane Origin and Formation.

Authors:  Yi Yang; Li Zheng; Xiaoxiang Zheng; Liang Ge
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

2.  In Vitro Dissection of Autophagy.

Authors:  Min Zhang; Dawei Liu; Liang Ge
Journal:  Curr Protoc Cell Biol       Date:  2017-12-11

Review 3.  Atg8-PE protein-based in vitro biochemical approaches to autophagy studies.

Authors:  Xue Huang; Jia Yao; Lu Liu; Yu Luo; Aimin Yang
Journal:  Autophagy       Date:  2022-01-24       Impact factor: 13.391

4.  A PI3K-WIPI2 positive feedback loop allosterically activates LC3 lipidation in autophagy.

Authors:  Dorotea Fracchiolla; Chunmei Chang; James H Hurley; Sascha Martens
Journal:  J Cell Biol       Date:  2020-07-06       Impact factor: 10.539

5.  Reconstitution of cargo-induced LC3 lipidation in mammalian selective autophagy.

Authors:  Chunmei Chang; Xiaoshan Shi; Liv E Jensen; Adam L Yokom; Dorotea Fracchiolla; Sascha Martens; James H Hurley
Journal:  Sci Adv       Date:  2021-04-23       Impact factor: 14.136

  5 in total

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