Literature DB >> 26945933

Analysis of biostructural changes, dynamics, and interactions - Small-angle X-ray scattering to the rescue.

Bente Vestergaard1.   

Abstract

Solution small angle X-ray scattering from biological macromolecules (BioSAXS) plays an increasingly important role in biostructural research. The analysis of complex protein mixtures, dynamic equilibriums, intrinsic disorder and evolving structural processes is facilitated by SAXS data, either in stand-alone applications, or with SAXS taking a prominent role in hybrid biostructural analysis. This is not the least due to the significant advances in both hardware and software that have taken place in particular at the large-scale facilities. Here, recent developments and the future potential of BioSAXS are reviewed, exemplified by numerous examples of elegant applications to challenging systems.
Copyright © 2016 The Author. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Advanced sample environments; Complex structural analysis; Hybrid biostructural analysis; Intrinsically disordered proteins; Small angle X-ray scattering

Mesh:

Substances:

Year:  2016        PMID: 26945933     DOI: 10.1016/j.abb.2016.02.029

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  9 in total

Review 1.  X-ray Scattering Studies of Protein Structural Dynamics.

Authors:  Steve P Meisburger; William C Thomas; Maxwell B Watkins; Nozomi Ando
Journal:  Chem Rev       Date:  2017-05-30       Impact factor: 60.622

2.  Structural Analyses of Intrinsically Disordered Proteins by Small-Angle X-Ray Scattering.

Authors:  Amin Sagar; Dmitri Svergun; Pau Bernadó
Journal:  Methods Mol Biol       Date:  2020

3.  Online Size-exclusion and Ion-exchange Chromatography on a SAXS Beamline.

Authors:  Martha E Brennich; Adam R Round; Stephanie Hutin
Journal:  J Vis Exp       Date:  2017-01-05       Impact factor: 1.355

4.  CHROMIXS: automatic and interactive analysis of chromatography-coupled small-angle X-ray scattering data.

Authors:  Alejandro Panjkovich; Dmitri I Svergun
Journal:  Bioinformatics       Date:  2018-06-01       Impact factor: 6.937

5.  Size-exclusion chromatography small-angle X-ray scattering of water soluble proteins on a laboratory instrument.

Authors:  Saskia Bucciarelli; Søren Roi Midtgaard; Martin Nors Pedersen; Søren Skou; Lise Arleth; Bente Vestergaard
Journal:  J Appl Crystallogr       Date:  2018-11-09       Impact factor: 3.304

6.  Bayesian inference of protein conformational ensembles from limited structural data.

Authors:  Wojciech Potrzebowski; Jill Trewhella; Ingemar Andre
Journal:  PLoS Comput Biol       Date:  2018-12-17       Impact factor: 4.475

7.  Small molecule inhibits T-cell acute lymphoblastic leukaemia oncogenic interaction through conformational modulation of LMO2.

Authors:  Leanne Milton-Harris; Mark Jeeves; Sarah A Walker; Simon E Ward; Erika J Mancini
Journal:  Oncotarget       Date:  2020-05-12

8.  Global fitting of multiple data frames from SEC-SAXS to investigate the structure of next-generation nanodiscs.

Authors:  Abigail Barclay; Nicolai Tidemand Johansen; Frederik Grønbæk Tidemand; Lise Arleth; Martin Cramer Pedersen
Journal:  Acta Crystallogr D Struct Biol       Date:  2022-03-11       Impact factor: 7.652

Review 9.  Large-Scale Conformational Changes and Protein Function: Breaking the in silico Barrier.

Authors:  Laura Orellana
Journal:  Front Mol Biosci       Date:  2019-11-05
  9 in total

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