Literature DB >> 26940497

Kinetics genetics: Incorporating the concept of genomic balance into an understanding of quantitative traits.

James A Birchler1, Adam F Johnson2, Reiner A Veitia3.   

Abstract

While most mutations are recessive, variants that affect quantitative traits are largely semi-dominant in their action making hybrids between divergent genotypes intermediate. In parallel, changes in chromosomal dosage (aneuploidy) for multiple regions of the genome modulate quantitative characters. We have previously argued that these observations are a reflection of a common process, originating from the more or less subtle effects of changes in dosage on the action of multi-subunit regulatory machineries. Kinetic analyses that vary the amount of one subunit of a complex while holding others constant do not always predict a linear response for the production of the whole. Indeed, in many instances, strong non-linear effects are expected. Here, we advocate that these kinetic observations and predictions should be incorporated into quantitative genetics thought.
Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

Entities:  

Keywords:  Additive inheritance; Dominance; Dosage effect; Epistasis; Gene balance hypothesis; Genetic load; Interactome; Inverse effect; Macromolecular complexes; Missing heritability; QTL; Quantitative genetics

Mesh:

Year:  2016        PMID: 26940497     DOI: 10.1016/j.plantsci.2016.02.002

Source DB:  PubMed          Journal:  Plant Sci        ISSN: 0168-9452            Impact factor:   4.729


  16 in total

1.  Plant science: Hybrid vigour characterized.

Authors:  James A Birchler
Journal:  Nature       Date:  2016-09-07       Impact factor: 49.962

2.  Integrated analysis of phenome, genome, and transcriptome of hybrid rice uncovered multiple heterosis-related loci for yield increase.

Authors:  Dayong Li; Zhiyuan Huang; Shuhui Song; Yeyun Xin; Donghai Mao; Qiming Lv; Ming Zhou; Dongmei Tian; Mingfeng Tang; Qi Wu; Xue Liu; Tingting Chen; Xianwei Song; Xiqin Fu; Bingran Zhao; Chengzhi Liang; Aihong Li; Guozhen Liu; Shigui Li; Songnian Hu; Xiaofeng Cao; Jun Yu; Longping Yuan; Caiyan Chen; Lihuang Zhu
Journal:  Proc Natl Acad Sci U S A       Date:  2016-09-23       Impact factor: 11.205

3.  Genomic architecture of heterosis for yield traits in rice.

Authors:  Xuehui Huang; Shihua Yang; Junyi Gong; Qiang Zhao; Qi Feng; Qilin Zhan; Yan Zhao; Wenjun Li; Benyi Cheng; Junhui Xia; Neng Chen; Tao Huang; Lei Zhang; Danlin Fan; Jiaying Chen; Congcong Zhou; Yiqi Lu; Qijun Weng; Bin Han
Journal:  Nature       Date:  2016-09-07       Impact factor: 49.962

4.  Gene Balance Predicts Transcriptional Responses Immediately Following Ploidy Change in Arabidopsis thaliana.

Authors:  Michael J Song; Barney I Potter; Jeff J Doyle; Jeremy E Coate
Journal:  Plant Cell       Date:  2020-03-17       Impact factor: 11.277

5.  Genomic imbalance determines positive and negative modulation of gene expression in diploid maize.

Authors:  Xiaowen Shi; Hua Yang; Chen Chen; Jie Hou; Katherine M Hanson; Patrice S Albert; Tieming Ji; Jianlin Cheng; James A Birchler
Journal:  Plant Cell       Date:  2021-05-31       Impact factor: 12.085

6.  Environmentally induced ribosomal DNA (rDNA) instability in human cells and populations exposed to hexavalent chromium [Cr (VI)].

Authors:  Jianlin Lou; Shoukai Yu; Lingfang Feng; Xinnian Guo; Meng Wang; Alan T Branco; Tao Li; Bernardo Lemos
Journal:  Environ Int       Date:  2021-03-25       Impact factor: 13.352

7.  A natural tandem array alleviates epigenetic repression of IPA1 and leads to superior yielding rice.

Authors:  Lin Zhang; Hong Yu; Bin Ma; Guifu Liu; Jianjun Wang; Junmin Wang; Rongcun Gao; Jinjun Li; Jiyun Liu; Jing Xu; Yingying Zhang; Qun Li; Xuehui Huang; Jianlong Xu; Jianming Li; Qian Qian; Bin Han; Zuhua He; Jiayang Li
Journal:  Nat Commun       Date:  2017-03-20       Impact factor: 14.919

8.  Cumulative and different genetic effects contributed to yield heterosis using maternal and paternal backcross populations in Upland cotton.

Authors:  Lingling Ma; Yumei Wang; Babar Ijaz; Jinping Hua
Journal:  Sci Rep       Date:  2019-03-08       Impact factor: 4.379

9.  Dissecting a heterotic gene through GradedPool-Seq mapping informs a rice-improvement strategy.

Authors:  Changsheng Wang; Shican Tang; Qilin Zhan; Qingqing Hou; Yan Zhao; Qiang Zhao; Qi Feng; Congcong Zhou; Danfeng Lyu; Lingling Cui; Yan Li; Jiashun Miao; Chuanrang Zhu; Yiqi Lu; Yongchun Wang; Ziqun Wang; Jingjie Zhu; Yingying Shangguan; Junyi Gong; Shihua Yang; Wuqi Wang; Jianfu Zhang; Huaan Xie; Xuehui Huang; Bin Han
Journal:  Nat Commun       Date:  2019-07-05       Impact factor: 14.919

10.  Patterns of Population Variation in Two Paleopolyploid Eudicot Lineages Suggest That Dosage-Based Selection on Homeologs Is Long-Lived.

Authors:  Yue Hao; Jacob D Washburn; Jacob Rosenthal; Brandon Nielsen; Eric Lyons; Patrick P Edger; J Chris Pires; Gavin C Conant
Journal:  Genome Biol Evol       Date:  2018-03-01       Impact factor: 3.416

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