Literature DB >> 26937045

Molecular and morphologic data reveal multiple species in Peromyscus pectoralis.

Robert D Bradley1, David J Schmidly1, Brian R Amman1, Roy N Platt1, Kathy M Neumann1, Howard M Huynh1, Raúl Muñiz-Martínez1, Celia López-González1, Nicté Ordóñez-Garza1.   

Abstract

DNA sequence and morphometric data were used to re-evaluate the taxonomy and systematics of Peromyscus pectoralis. Phylogenetic analyses (maximum likelihood and Bayesian inference) of DNA sequences from the mitochondrial cytochrome-b gene in 44 samples of P. pectoralis indicated 2 well-supported monophyletic clades. The 1st clade contained specimens from Texas historically assigned to P. p. laceianus; the 2nd was comprised of specimens previously referable to P. p. collinus, P. p. laceianus, and P. p. pectoralis obtained from northern and eastern Mexico. Levels of genetic variation (~7%) between these 2 clades indicated that the genetic divergence typically exceeded that reported for other species of Peromyscus. Samples of P. p. laceianus north and south of the Río Grande were not monophyletic. In addition, samples representing P. p. collinus and P. p. pectoralis formed 2 clades that differed genetically by 7.14%. Multivariate analyses of external and cranial measurements from 63 populations of P. pectoralis revealed 4 morpho-groups consistent with clades in the DNA sequence analysis: 1 from Texas and New Mexico assignable to P. p. laceianus; a 2nd from western and southern Mexico assignable to P. p. pectoralis; a 3rd from northern and central Mexico previously assigned to P. p. pectoralis but herein shown to represent an undescribed taxon; and a 4th from southeastern Mexico assignable to P. p. collinus. Based on the concordance of these results, populations from the United States are referred to as P. laceianus, whereas populations from Mexico are referred to as P. pectoralis (including some samples historically assigned to P. p. collinus, P. p. laceianus, and P. p. pectoralis). A new subspecies is described to represent populations south of the Río Grande in northern and central Mexico. Additional research is needed to discern if P. p. collinus warrants species recognition.

Entities:  

Keywords:  DNA sequences; Peromyscus pectoralis; cytochrome-b gene; morphometrics; taxonomy

Year:  2015        PMID: 26937045      PMCID: PMC4668931          DOI: 10.1093/jmammal/gyv049

Source DB:  PubMed          Journal:  J Mammal        ISSN: 0022-2372            Impact factor:   2.416


  9 in total

1.  MRBAYES: Bayesian inference of phylogenetic trees.

Authors:  J P Huelsenbeck; F Ronquist
Journal:  Bioinformatics       Date:  2001-08       Impact factor: 6.937

2.  RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees.

Authors:  A Stamatakis; T Ludwig; H Meier
Journal:  Bioinformatics       Date:  2004-12-17       Impact factor: 6.937

3.  SPECIATION IN MAMMALS AND THE GENETIC SPECIES CONCEPT.

Authors:  Robert J Baker; Robert D Bradley
Journal:  J Mammal       Date:  2006-08-01       Impact factor: 2.416

4.  Molecular phylogenetics of the Peromyscus boylii species group (Rodentia: muridae) based on mitochondrial cytochrome b sequences.

Authors:  I Tiemann-Boege; C W Kilpatrick; D J Schmidly; R D Bradley
Journal:  Mol Phylogenet Evol       Date:  2000-09       Impact factor: 4.286

5.  Biochemical variation and systematics of Peromyscus pectoralis.

Authors:  C W Kilpatrick; E G Zimmerman
Journal:  J Mammal       Date:  1976-08       Impact factor: 2.416

6.  MODELTEST: testing the model of DNA substitution.

Authors:  D Posada; K A Crandall
Journal:  Bioinformatics       Date:  1998       Impact factor: 6.937

7.  Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase.

Authors:  R K Saiki; D H Gelfand; S Stoffel; S J Scharf; R Higuchi; G T Horn; K B Mullis; H A Erlich
Journal:  Science       Date:  1988-01-29       Impact factor: 47.728

8.  A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.

Authors:  M Kimura
Journal:  J Mol Evol       Date:  1980-12       Impact factor: 2.395

9.  TOWARD A MOLECULAR PHYLOGENY FOR PEROMYSCUS: EVIDENCE FROM MITOCHONDRIAL CYTOCHROME-b SEQUENCES.

Authors:  Robert D Bradley; Nevin D Durish; Duke S Rogers; Jacqueline R Miller; Mark D Engstrom; C William Kilpatrick
Journal:  J Mammal       Date:  2007-01-01       Impact factor: 2.416

  9 in total
  1 in total

1.  Muleshoe Virus and Other Hantaviruses Associated with Neotomine or Sigmodontine Rodents in Texas.

Authors:  Mary Louise Milazzo; Maria N B Cajimat; Martin H Richter; Robert D Bradley; Charles F Fulhorst
Journal:  Vector Borne Zoonotic Dis       Date:  2017-07-17       Impact factor: 2.133

  1 in total

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