Literature DB >> 26929078

A structurally plastic ribonucleoprotein complex mediates post-transcriptional gene regulation in HIV-1.

Jason D Fernandes1, David S Booth2, Alan D Frankel1.   

Abstract

HIV replication requires the nuclear export of essential, intron-containing viral RNAs. To facilitate export, HIV encodes the viral accessory protein Rev which binds unspliced and partially spliced viral RNAs and creates a ribonucleoprotein complex that recruits the cellular Chromosome maintenance factor 1 export machinery. Exporting RNAs in this manner bypasses the necessity for complete splicing as a prerequisite for mRNA export, and allows intron-containing RNAs to reach the cytoplasm intact for translation and virus packaging. Recent structural studies have revealed that this entire complex exhibits remarkable plasticity at many levels of organization, including RNA folding, protein-RNA recognition, multimer formation, and host factor recruitment. In this review, we explore each aspect of plasticity from structural, functional, and possible therapeutic viewpoints. WIREs RNA 2016, 7:470-486. doi: 10.1002/wrna.1342 For further resources related to this article, please visit the WIREs website.
© 2016 Wiley Periodicals, Inc.

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Year:  2016        PMID: 26929078      PMCID: PMC5026123          DOI: 10.1002/wrna.1342

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev RNA        ISSN: 1757-7004            Impact factor:   9.957


  119 in total

1.  Functional variability of Rev response element in HIV-1 primary isolates.

Authors:  Angsana Phuphuakrat; Prasert Auewarakul
Journal:  Virus Genes       Date:  2005-01       Impact factor: 2.332

2.  Endosomal trafficking of HIV-1 gag and genomic RNAs regulates viral egress.

Authors:  Dorothée Molle; Carolina Segura-Morales; Gregory Camus; Clarisse Berlioz-Torrent; Jorgen Kjems; Eugenia Basyuk; Edouard Bertrand
Journal:  J Biol Chem       Date:  2009-05-18       Impact factor: 5.157

Review 3.  Understanding nucleic acid-ion interactions.

Authors:  Jan Lipfert; Sebastian Doniach; Rhiju Das; Daniel Herschlag
Journal:  Annu Rev Biochem       Date:  2014-03-05       Impact factor: 23.643

4.  Selection and characterization of human immunodeficiency virus type 1 mutants that are resistant to inhibition by the transdominant negative RevM10 protein.

Authors:  T E Hamm; D Rekosh; M L Hammarskjöld
Journal:  J Virol       Date:  1999-07       Impact factor: 5.103

5.  Biochemical analysis of the complex between the tetrameric export adapter protein Rec of HERV-K/HML-2 and the responsive RNA element RcRE pck30.

Authors:  Janina S Langner; Nina V Fuchs; Jan Hoffmann; Alexander Wittmann; Bernhard Brutschy; Roswitha Löwer; Beatrix Suess
Journal:  J Virol       Date:  2012-06-13       Impact factor: 5.103

6.  Selective inhibitors of nuclear export show that CRM1/XPO1 is a target in chronic lymphocytic leukemia.

Authors:  Rosa Lapalombella; Qingxiang Sun; Katie Williams; Larissa Tangeman; Shruti Jha; Yiming Zhong; Virginia Goettl; Emilia Mahoney; Caroline Berglund; Sneha Gupta; Alicia Farmer; Rajeswaran Mani; Amy J Johnson; David Lucas; Xiaokui Mo; Dirk Daelemans; Vincent Sandanayaka; Sharon Shechter; Dilara McCauley; Sharon Shacham; Michael Kauffman; Yuh Min Chook; John C Byrd
Journal:  Blood       Date:  2012-10-03       Impact factor: 22.113

7.  A fraction of Crm1 locates at centrosomes by its CRIME domain and regulates the centrosomal localization of pericentrin.

Authors:  Qinying Liu; Qing Jiang; Chuanmao Zhang
Journal:  Biochem Biophys Res Commun       Date:  2009-05-05       Impact factor: 3.575

8.  Evolution of a species-specific determinant within human CRM1 that regulates the post-transcriptional phases of HIV-1 replication.

Authors:  Nathan M Sherer; Chad M Swanson; Stéphane Hué; Roland G Roberts; Julien R C Bergeron; Michael H Malim
Journal:  PLoS Pathog       Date:  2011-11-17       Impact factor: 6.823

Review 9.  Host cell factors in HIV replication: meta-analysis of genome-wide studies.

Authors:  Frederic D Bushman; Nirav Malani; Jason Fernandes; Iván D'Orso; Gerard Cagney; Tracy L Diamond; Honglin Zhou; Daria J Hazuda; Amy S Espeseth; Renate König; Sourav Bandyopadhyay; Trey Ideker; Stephen P Goff; Nevan J Krogan; Alan D Frankel; John A T Young; Sumit K Chanda
Journal:  PLoS Pathog       Date:  2009-05-29       Impact factor: 6.823

10.  Characterization of novel inhibitors of HIV-1 replication that function via alteration of viral RNA processing and rev function.

Authors:  Raymond W Wong; Ahalya Balachandran; Matthew Haaland; Peter Stoilov; Alan Cochrane
Journal:  Nucleic Acids Res       Date:  2013-08-13       Impact factor: 16.971

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  10 in total

Review 1.  Intron retention in viruses and cellular genes: Detention, border controls and passports.

Authors:  David Rekosh; Marie-Louise Hammarskjold
Journal:  Wiley Interdiscip Rev RNA       Date:  2018-03-06       Impact factor: 9.957

2.  Evolution of the HIV-1 Rev Response Element during Natural Infection Reveals Nucleotide Changes That Correlate with Altered Structure and Increased Activity over Time.

Authors:  Chringma Sherpa; Patrick E H Jackson; Laurie R Gray; Kathryn Anastos; Stuart F J Le Grice; Marie-Louise Hammarskjold; David Rekosh
Journal:  J Virol       Date:  2019-05-15       Impact factor: 5.103

3.  HIV RGB: Automated Single-Cell Analysis of HIV-1 Rev-Dependent RNA Nuclear Export and Translation Using Image Processing in KNIME.

Authors:  Edward L Evans; Ginger M Pocock; Gabriel Einsdorf; Ryan T Behrens; Ellen T A Dobson; Marcel Wiedenmann; Christian Birkhold; Paul Ahlquist; Kevin W Eliceiri; Nathan M Sherer
Journal:  Viruses       Date:  2022-04-26       Impact factor: 5.818

4.  Sequence and Functional Variation in the HIV-1 Rev Regulatory Axis.

Authors:  Patrick E H Jackson; Godfrey Dzhivhuho; David Rekosh; Marie-Louise Hammarskjold
Journal:  Curr HIV Res       Date:  2020       Impact factor: 1.581

5.  An NXF1 mRNA with a retained intron is expressed in hippocampal and neocortical neurons and is translated into a protein that functions as an Nxf1 cofactor.

Authors:  Ying Li; Yeou-Cherng Bor; Mark P Fitzgerald; Kevin S Lee; David Rekosh; Marie-Louise Hammarskjold
Journal:  Mol Biol Cell       Date:  2016-10-05       Impact factor: 4.138

6.  PJA2 ubiquitinates the HIV-1 Tat protein with atypical chain linkages to activate viral transcription.

Authors:  Tyler B Faust; Yang Li; Gwendolyn M Jang; Jeffrey R Johnson; Shumin Yang; Amit Weiss; Nevan J Krogan; Alan D Frankel
Journal:  Sci Rep       Date:  2017-03-27       Impact factor: 4.379

7.  A novel retroviral vector system to analyze expression from mRNA with retained introns using fluorescent proteins and flow cytometry.

Authors:  Patrick E H Jackson; Jing Huang; Monika Sharma; Sara K Rasmussen; Marie-Louise Hammarskjold; David Rekosh
Journal:  Sci Rep       Date:  2019-04-23       Impact factor: 4.379

8.  Nucleic acid recognition and antiviral activity of 1,4-substituted terphenyl compounds mimicking all faces of the HIV-1 Rev protein positively-charged α-helix.

Authors:  Cristina Medina-Trillo; Daniel M Sedgwick; Lidia Herrera; Manuela Beltrán; Ángela Moreno; Pablo Barrio; Luis M Bedoya; José Alcamí; Santos Fustero; José Gallego
Journal:  Sci Rep       Date:  2020-04-28       Impact factor: 4.379

9.  The changing paradigm of intron retention: regulation, ramifications and recipes.

Authors:  Geoffray Monteuuis; Justin J L Wong; Charles G Bailey; Ulf Schmitz; John E J Rasko
Journal:  Nucleic Acids Res       Date:  2019-12-16       Impact factor: 16.971

10.  Binding stoichiometry and structural model of the HIV-1 Rev/importin β complex.

Authors:  Didier Spittler; Rose-Laure Indorato; Elisabetta Boeri Erba; Elise Delaforge; Luca Signor; Simon J Harris; Isabel Garcia-Saez; Andrés Palencia; Frank Gabel; Martin Blackledge; Marjolaine Noirclerc-Savoye; Carlo Petosa
Journal:  Life Sci Alliance       Date:  2022-08-22
  10 in total

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