Literature DB >> 26928892

Direct Free Energy Calculation in the Continuous Fractional Component Gibbs Ensemble.

Ali Poursaeidesfahani1, Ariana Torres-Knoop2, David Dubbeldam2, Thijs J H Vlugt1.   

Abstract

A new formulation of the Gibbs ensemble (GE) combined with the continuous fractional component Monte Carlo method is presented. In the proposed formulation, only a single fractional molecule per component is used instead of two in the original formulation by Shi and Maginn ( J. Comput. Chem. 2008 , 29 , 2520 - 2530 ). This has the following advantages: (1) one directly obtains chemical potentials, without using test particles. We show analytically that the expressions for the chemical potential are identical to those in the conventional Gibbs ensemble; (2) biasing is applied to each simulation box independently; (3) maximum allowed changes in the scaling parameter of intermolecular interactions can be chosen differently in each simulation box. Obtaining chemical potentials directly facilitates thermodynamic modeling using equations of state, and it can be used as an independent check to ensure that chemical equilibrium is achieved. As a proof of principle, our method is tested for Lennard-Jones (LJ) particles and the TIP3P-Ew water model. Results are compared with the conventional GE. Excellent agreement was found both for average densities and chemical potentials. In our new approach, the acceptance probability for molecule exchanges between the boxes is much higher (typically larger than 40% for LJ particles) than for the conventional GE (typically lower than 2% for LJ particles). It is also shown that the contribution of the fractional molecule should be disregarded when computing ensemble averages such as the average energy per molecule and the average densities. The algorithm can be easily extended to mixtures and molecules with intramolecular interactions.

Entities:  

Year:  2016        PMID: 26928892     DOI: 10.1021/acs.jctc.5b01230

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  10 in total

1.  Effect of Water Content on Thermodynamic Properties of Compressed Hydrogen.

Authors:  Ahmadreza Rahbari; Julio C Garcia-Navarro; Mahinder Ramdin; Leo J P van den Broeke; Othonas A Moultos; David Dubbeldam; Thijs J H Vlugt
Journal:  J Chem Eng Data       Date:  2021-04-09       Impact factor: 2.694

2.  Efficient Application of Continuous Fractional Component Monte Carlo in the Reaction Ensemble.

Authors:  Ali Poursaeidesfahani; Remco Hens; Ahmadreza Rahbari; Mahinder Ramdin; David Dubbeldam; Thijs J H Vlugt
Journal:  J Chem Theory Comput       Date:  2017-08-07       Impact factor: 6.006

3.  Behavior of the Enthalpy of Adsorption in Nanoporous Materials Close to Saturation Conditions.

Authors:  Ariana Torres-Knoop; Ali Poursaeidesfahani; Thijs J H Vlugt; David Dubbeldam
Journal:  J Chem Theory Comput       Date:  2017-06-09       Impact factor: 6.006

4.  Brick-CFCMC: Open Source Software for Monte Carlo Simulations of Phase and Reaction Equilibria Using the Continuous Fractional Component Method.

Authors:  Remco Hens; Ahmadreza Rahbari; Sebastián Caro-Ortiz; Noura Dawass; Máté Erdős; Ali Poursaeidesfahani; Hirad S Salehi; Alper T Celebi; Mahinder Ramdin; Othonas A Moultos; David Dubbeldam; Thijs J H Vlugt
Journal:  J Chem Inf Model       Date:  2020-04-21       Impact factor: 4.956

5.  Multiple Free Energy Calculations from Single State Point Continuous Fractional Component Monte Carlo Simulation Using Umbrella Sampling.

Authors:  Ahmadreza Rahbari; Remco Hens; Othonas A Moultos; David Dubbeldam; Thijs J H Vlugt
Journal:  J Chem Theory Comput       Date:  2020-02-12       Impact factor: 6.006

6.  Gibbs Ensemble Monte Carlo Simulation of Fluids in Confinement: Relation between the Differential and Integral Pressures.

Authors:  Máté Erdős; Olav Galteland; Dick Bedeaux; Signe Kjelstrup; Othonas A Moultos; Thijs J H Vlugt
Journal:  Nanomaterials (Basel)       Date:  2020-02-09       Impact factor: 5.076

7.  Solubility of Carbon Dioxide, Hydrogen Sulfide, Methane, and Nitrogen in Monoethylene Glycol; Experiments and Molecular Simulation.

Authors:  Noura Dawass; Ricardo R Wanderley; Mahinder Ramdin; Othonas A Moultos; Hanna K Knuutila; Thijs J H Vlugt
Journal:  J Chem Eng Data       Date:  2020-12-03       Impact factor: 2.694

8.  Competitive Adsorption of Xylenes at Chemical Equilibrium in Zeolites.

Authors:  Sebastián Caro-Ortiz; Erik Zuidema; Marcello Rigutto; David Dubbeldam; Thijs J H Vlugt
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2021-02-10       Impact factor: 4.126

9.  Solubilities and Transport Properties of CO2, Oxalic Acid, and Formic Acid in Mixed Solvents Composed of Deep Eutectic Solvents, Methanol, and Propylene Carbonate.

Authors:  Noura Dawass; Jilles Langeveld; Mahinder Ramdin; Elena Pérez-Gallent; Angel A Villanueva; Erwin J M Giling; Jort Langerak; Leo J P van den Broeke; Thijs J H Vlugt; Othonas A Moultos
Journal:  J Phys Chem B       Date:  2022-05-04       Impact factor: 3.466

10.  Molecular Simulation of Vapor-Liquid Equilibria Using the Wolf Method for Electrostatic Interactions.

Authors:  Remco Hens; Thijs J H Vlugt
Journal:  J Chem Eng Data       Date:  2017-12-13       Impact factor: 2.694

  10 in total

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