Literature DB >> 26925441

Complete genome sequencing and comparative analysis of three dengue virus type 2 Pakistani isolates.

Madiha Akram1, Muhammad Idrees2.   

Abstract

Dengue is currently one of the most important arthropod borne human viral diseases caused by a flavivirus named as dengue virus. It is now endemic in Pakistan since many dengue fever outbreaks have been observed in Pakistan during the last three decades. Major serotype of dengue virus circulating in Pakistan is serotype 2. Complete genome sequences of three Pakistani dengue virus serotype 2 isolates were generated. Analysis of complete genome sequences showed that Pakistani isolates of dengue virus serotype 2 belonged to cosmopolitan genotype. This study identifies a number of amino acid substitutions that were introduced in local dengue virus serotype 2 isolate over the years. The study provides a significant insight into the evolution of serotype 2 of dengue virus in Pakistan. This is the first report of complete genome sequence information of dengue virus from the most recent outbreak (2013) in Punjab, Pakistan.

Entities:  

Keywords:  Dengue virus; Genome; Genotype; Outbreak; Sequence analysis; Serotype

Year:  2016        PMID： 26925441      PMCID： PMC4758309          DOI： 10.1007/s13337-015-0279-3

Source DB:  PubMed          Journal:  Virusdisease        ISSN： 2347-3584


  25 in total

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Authors:  Julie D Thompson; Toby J Gibson; Des G Higgins
Journal:  Curr Protoc Bioinformatics       Date:  2002-08

2.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Authors:  Koichiro Tamura; Daniel Peterson; Nicholas Peterson; Glen Stecher; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

3.  West Nile virus in Pakistan. 1. Sero-epidemiological studies in Punjab Province.

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Journal:  Trans R Soc Trop Med Hyg       Date:  1982       Impact factor: 2.184

4.  Type- and subcomplex-specific neutralizing antibodies against domain III of dengue virus type 2 envelope protein recognize adjacent epitopes.

Authors:  Soila Sukupolvi-Petty; S Kyle Austin; Whitney E Purtha; Theodore Oliphant; Grant E Nybakken; Jacob J Schlesinger; John T Roehrig; Gregory D Gromowski; Alan D Barrett; Daved H Fremont; Michael S Diamond
Journal:  J Virol       Date:  2007-09-19       Impact factor: 5.103

5.  Dengue outbreak in Karachi, Pakistan, 2006: experience at a tertiary care center.

Authors:  E Khan; J Siddiqui; S Shakoor; V Mehraj; B Jamil; R Hasan
Journal:  Trans R Soc Trop Med Hyg       Date:  2007-08-13       Impact factor: 2.184

6.  Co-circulations of two genotypes of dengue virus in 2006 out-break of dengue hemorrhagic fever in Karachi, Pakistan.

Authors:  E Khan; R Hasan; V Mehraj; A Nasir; J Siddiqui; R Hewson
Journal:  J Clin Virol       Date:  2008-07-18       Impact factor: 3.168

7.  Complete genome sequencing and evolutionary analysis of Indian isolates of Dengue virus type 2.

Authors:  Paban Kumar Dash; Shashi Sharma; Manisha Soni; Ankita Agarwal; Manmohan Parida; P V Lakshmana Rao
Journal:  Biochem Biophys Res Commun       Date:  2013-06-10       Impact factor: 3.575

8.  Dengue virus infection among children with undifferentiated fever in Karachi.

Authors:  D S Akram; A Igarashi; T Takasu
Journal:  Indian J Pediatr       Date:  1998 Sep-Oct       Impact factor: 5.319

Review 9.  5'- and 3'-noncoding regions in flavivirus RNA.

Authors:  Lewis Markoff
Journal:  Adv Virus Res       Date:  2003       Impact factor: 9.937

10.  Emergence and diversification of dengue 2 cosmopolitan genotype in Pakistan, 2011.

Authors:  Mohammad A Khan; Esther M Ellis; Hasitha A Tissera; Mohammad Y Alvi; Fatima F Rahman; Faisal Masud; Angelia Chow; Shiqin Howe; Vijaykrishna Dhanasekaran; Brett R Ellis; Duane J Gubler
Journal:  PLoS One       Date:  2013-03-08       Impact factor: 3.240
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  2 in total

1.  Epidemiological Characterization of the 2017 Dengue Outbreak in Zhejiang, China and Molecular Characterization of the Viruses.

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Journal:  Front Cell Infect Microbiol       Date:  2018-07-04       Impact factor: 5.293

2.  Evolution, heterogeneity and global dispersal of cosmopolitan genotype of Dengue virus type 2.

Authors:  Surya Pavan Yenamandra; Carmen Koo; Suzanna Chiang; Han Shi Jeri Lim; Zhen Yuan Yeo; Lee Ching Ng; Hapuarachchige Chanditha Hapuarachchi
Journal:  Sci Rep       Date:  2021-06-29       Impact factor: 4.379
  2 in total

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