Literature DB >> 26924240

Whole genome de novo sequencing and genome annotation of the world popular cultivated edible mushroom, Lentinula edodes.

Donghwan Shim1, Sin-Gi Park2, Kangmin Kim3, Wonsil Bae4, Gir Won Lee2, Byeong-Suk Ha5, Hyeon-Su Ro5, Myungkil Kim6, Rhim Ryoo6, Sung-Keun Rhee7, Ill-Sup Nou8, Chang-Duck Koo9, Chang Pyo Hong10, Hojin Ryu11.   

Abstract

Lentinula edodes, the popular shiitake mushroom, is one of the most important cultivated edible mushrooms. It is used as a food and for medicinal purposes. Here, we present the 46.1 Mb draft genome of L. edodes, comprising 13,028 predicted gene models. The genome assembly consists of 31 scaffolds. Gene annotation provides key information about various signaling pathways and secondary metabolites. This genomic information should help establish the molecular genetic markers for MAS/MAB and increase our understanding of the genome structure and function.
Copyright © 2016 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Genome sequence; Lentinan; Lentinula edodes B17; Lignocellulolytic enzymes; Shiitake mushroom

Mesh:

Year:  2016        PMID: 26924240     DOI: 10.1016/j.jbiotec.2016.02.032

Source DB:  PubMed          Journal:  J Biotechnol        ISSN: 0168-1656            Impact factor:   3.307


  27 in total

1.  TaF: a web platform for taxonomic profile-based fungal gene prediction.

Authors:  Sin-Gi Park; DongSung Ryu; Hyunsung Lee; Hojin Ryu; Yong Ju Ahn; Seung Il Yoo; Junsu Ko; Chang Pyo Hong
Journal:  Genes Genomics       Date:  2018-11-19       Impact factor: 1.839

2.  Lentinula edodes Genome Survey and Postharvest Transcriptome Analysis.

Authors:  Yuichi Sakamoto; Keiko Nakade; Shiho Sato; Kentaro Yoshida; Kazuhiro Miyazaki; Satoshi Natsume; Naotake Konno
Journal:  Appl Environ Microbiol       Date:  2017-05-01       Impact factor: 4.792

3.  Predominance of Streptococcus suis ST1 and ST7 in human cases in China, and detection of a novel sequence type, ST658.

Authors:  Yang Zhou; Xingxing Dong; Zhiwei Li; Geng Zou; Li Lin; Xiaohong Wang; Huanchun Chen; Robin B Gasser; Jinquan Li
Journal:  Virulence       Date:  2016-09-30       Impact factor: 5.882

4.  Chitinases Play a Key Role in Stipe Cell Wall Extension in the Mushroom Coprinopsis cinerea.

Authors:  Jiangsheng Zhou; Liqin Kang; Cuicui Liu; Xin Niu; Xiaojun Wang; Hailong Liu; Wenming Zhang; Zhonghua Liu; Jean-Paul Latgé; Sheng Yuan
Journal:  Appl Environ Microbiol       Date:  2019-07-18       Impact factor: 4.792

5.  UVB Irradiation-Induced Transcriptional Changes in Lignin- and Flavonoid Biosynthesis and Indole/Tryptophan-Auxin-Responsive Genes in Rice Seedlings.

Authors:  Ga-Eun Kim; Me-Sun Kim; Jwakyung Sung
Journal:  Plants (Basel)       Date:  2022-06-20

6.  Development and Molecular Characterization of Novel Polymorphic Genomic DNA SSR Markers in Lentinula edodes.

Authors:  Suyun Moon; Hwa-Yong Lee; Donghwan Shim; Myungkil Kim; Kang-Hyeon Ka; Rhim Ryoo; Han-Gyu Ko; Chang-Duck Koo; Jong-Wook Chung; Hojin Ryu
Journal:  Mycobiology       Date:  2017-06-30       Impact factor: 1.858

7.  Development of 44 Novel Polymorphic SSR Markers for Determination of Shiitake Mushroom (Lentinula edodes) Cultivars.

Authors:  Hwa-Yong Lee; Suyun Moon; Donghwan Shim; Chang Pyo Hong; Yi Lee; Chang-Duck Koo; Jong-Wook Chung; Hojin Ryu
Journal:  Genes (Basel)       Date:  2017-03-24       Impact factor: 4.096

8.  Long-read transcriptome data for improved gene prediction in Lentinula edodes.

Authors:  Sin-Gi Park; Seung Il Yoo; Dong Sung Ryu; Hyunsung Lee; Yong Ju Ahn; Hojin Ryu; Junsu Ko; Chang Pyo Hong
Journal:  Data Brief       Date:  2017-09-27

9.  Genome Sequence of the Edible Cultivated Mushroom Lentinula edodes (Shiitake) Reveals Insights into Lignocellulose Degradation.

Authors:  Lianfu Chen; Yuhua Gong; Yingli Cai; Wei Liu; Yan Zhou; Yang Xiao; Zhangyi Xu; Yin Liu; Xiaoyu Lei; Gangzheng Wang; Mengpei Guo; Xiaolong Ma; Yinbing Bian
Journal:  PLoS One       Date:  2016-08-08       Impact factor: 3.240

10.  Nucleus-Selective Expression of Laccase Genes in the Dikaryotic Strain of Lentinula edodes.

Authors:  Byeongsuk Ha; Sieun Lee; Sinil Kim; Minseek Kim; Yoon Jung Moon; Yelin Song; Hyeon-Su Ro
Journal:  Mycobiology       Date:  2017-12-31       Impact factor: 1.858

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