Literature DB >> 26924100

Transcriptomic features associated with energy production in the muscles of Pacific bluefin tuna and Pacific cod.

Mami Shibata1, Miyuki Mekuchi2, Kazuki Mori3, Shigeru Muta4, Vishwajit Sur Chowdhury5, Yoji Nakamura2, Nobuhiko Ojima2, Kenji Saitoh2, Takanori Kobayashi6, Tokio Wada6, Kiyoshi Inouye7, Satoru Kuhara4, Kosuke Tashiro4.   

Abstract

Bluefin tuna are high-performance swimmers and top predators in the open ocean. Their swimming is grounded by unique features including an exceptional glycolytic potential in white muscle, which is supported by high enzymatic activities. Here we performed high-throughput RNA sequencing (RNA-Seq) in muscles of the Pacific bluefin tuna (Thunnus orientalis) and Pacific cod (Gadus macrocephalus) and conducted a comparative transcriptomic analysis of genes related to energy production. We found that the total expression of glycolytic genes was much higher in the white muscle of tuna than in the other muscles, and that the expression of only six genes for glycolytic enzymes accounted for 83.4% of the total. These expression patterns were in good agreement with the patterns of enzyme activity previously reported. The findings suggest that the mRNA expression of glycolytic genes may contribute directly to the enzymatic activities in the muscles of tuna.

Entities:  

Keywords:  Gadus macrocephalus; RNA-seq; Thunnus orientalis; glycolysis; warm-bloodedness

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Year:  2016        PMID: 26924100     DOI: 10.1080/09168451.2016.1151341

Source DB:  PubMed          Journal:  Biosci Biotechnol Biochem        ISSN: 0916-8451            Impact factor:   2.043


  3 in total

1.  Trans-omics approaches used to characterise fish nutritional biorhythms in leopard coral grouper (Plectropomus leopardus).

Authors:  Miyuki Mekuchi; Kenji Sakata; Tomofumi Yamaguchi; Masahiko Koiso; Jun Kikuchi
Journal:  Sci Rep       Date:  2017-08-24       Impact factor: 4.379

2.  Skeletal muscle and cardiac transcriptomics of a regionally endothermic fish, the Pacific bluefin tuna, Thunnus orientalis.

Authors:  Adam Ciezarek; Luke Gardner; Vincent Savolainen; Barbara Block
Journal:  BMC Genomics       Date:  2020-09-17       Impact factor: 3.969

3.  Estimation of tuna population by the improved analytical pipeline of unique molecular identifier-assisted HaCeD-Seq (haplotype count from eDNA).

Authors:  Kazutoshi Yoshitake; Atushi Fujiwara; Aiko Matsuura; Masashi Sekino; Motoshige Yasuike; Yoji Nakamura; Reiichiro Nakamichi; Masaaki Kodama; Yumiko Takahama; Akinori Takasuka; Shuichi Asakawa; Kazuomi Nishikiori; Takanori Kobayashi; Shugo Watabe
Journal:  Sci Rep       Date:  2021-04-12       Impact factor: 4.379

  3 in total

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