Literature DB >> 26909226

Current application of proteomics in biomarker discovery for inflammatory bowel disease.

Patrick Py Chan1, Valerie C Wasinger1, Rupert W Leong1.   

Abstract

Recently, the field of proteomics has rapidly expanded in its application towards clinical research with objectives ranging from elucidating disease pathogenesis to discovering clinical biomarkers. As proteins govern and/or reflect underlying cellular processes, the study of proteomics provides an attractive avenue for research as it allows for the rapid identification of protein profiles in a biological sample. Inflammatory bowel disease (IBD) encompasses several heterogeneous and chronic conditions of the gastrointestinal tract. Proteomic technology provides a powerful means of addressing major challenges in IBD today, especially for identifying biomarkers to improve its diagnosis and management. This review will examine the current state of IBD proteomics research and its use in biomarker research. Furthermore, we also discuss the challenges of translating proteomic research into clinically relevant tools. The potential application of this growing field is enormous and is likely to provide significant insights towards improving our future understanding and management of IBD.

Entities:  

Keywords:  Biomarkers; Inflammatory bowel disease; Mass spectrometry; Molecular diagnostic techniques; Proteomics

Year:  2016        PMID: 26909226      PMCID: PMC4753187          DOI: 10.4291/wjgp.v7.i1.27

Source DB:  PubMed          Journal:  World J Gastrointest Pathophysiol        ISSN: 2150-5330


  81 in total

Review 1.  Proteomics for cancer biomarker discovery.

Authors:  Pothur R Srinivas; Mukesh Verma; Yinming Zhao; Sudhir Srivastava
Journal:  Clin Chem       Date:  2002-08       Impact factor: 8.327

Review 2.  Protein biomarker discovery and validation: the long and uncertain path to clinical utility.

Authors:  Nader Rifai; Michael A Gillette; Steven A Carr
Journal:  Nat Biotechnol       Date:  2006-08       Impact factor: 54.908

3.  Proteomic profiling from human samples: the body fluid alternative.

Authors:  S Kennedy
Journal:  Toxicol Lett       Date:  2001-03-31       Impact factor: 4.372

Review 4.  IBD serological panels: facts and perspectives.

Authors:  Laurent Peyrin-Biroulet; Annie Standaert-Vitse; Julien Branche; Mathias Chamaillard
Journal:  Inflamm Bowel Dis       Date:  2007-12       Impact factor: 5.325

5.  Protein profiles of peripheral blood mononuclear cells are useful for differential diagnosis of ulcerative colitis and Crohn's disease.

Authors:  Moriaki Hatsugai; Manae S Kurokawa; Takefumi Kouro; Kohei Nagai; Mitsumi Arito; Kayo Masuko; Naoya Suematsu; Kazuki Okamoto; Fumio Itoh; Tomohiro Kato
Journal:  J Gastroenterol       Date:  2010-01-05       Impact factor: 7.527

6.  A label-free nano-liquid chromatography-mass spectrometry approach for quantitative serum peptidomics in Crohn's disease patients.

Authors:  Paolo Nanni; Fredrik Levander; Giulia Roda; Alessandra Caponi; Peter James; Aldo Roda
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2009-08-07       Impact factor: 3.205

7.  Indications for investigation of chronic gastrointestinal symptoms.

Authors:  R M Beattie; J A Walker-Smith; S H Murch
Journal:  Arch Dis Child       Date:  1995-10       Impact factor: 3.791

8.  Proteomic approaches to tumor marker discovery.

Authors:  Alex J Rai; Zhen Zhang; Jason Rosenzweig; Ie-Ming Shih; Thang Pham; Eric T Fung; Lori J Sokoll; Daniel W Chan
Journal:  Arch Pathol Lab Med       Date:  2002-12       Impact factor: 5.534

9.  Does the urinary excretion of alpha1-microglobulin and albumin predict clinical disease activity in ulcerative colitis?

Authors:  Ulver Derici; Candan Tuncer; Fatma Ayerden Ebinç; Ruya Mutluay; Fahri Yakaryilmaz; Sevsen Kulaksizoglu; Oguz Soylemezoglu; Sukru Sindel
Journal:  Adv Ther       Date:  2008-12       Impact factor: 3.845

10.  Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach.

Authors:  Steven A Carr; Susan E Abbatiello; Bradley L Ackermann; Christoph Borchers; Bruno Domon; Eric W Deutsch; Russell P Grant; Andrew N Hoofnagle; Ruth Hüttenhain; John M Koomen; Daniel C Liebler; Tao Liu; Brendan MacLean; D R Mani; Elizabeth Mansfield; Hendrik Neubert; Amanda G Paulovich; Lukas Reiter; Olga Vitek; Ruedi Aebersold; Leigh Anderson; Robert Bethem; Josip Blonder; Emily Boja; Julianne Botelho; Michael Boyne; Ralph A Bradshaw; Alma L Burlingame; Daniel Chan; Hasmik Keshishian; Eric Kuhn; Christopher Kinsinger; Jerry S H Lee; Sang-Won Lee; Robert Moritz; Juan Oses-Prieto; Nader Rifai; James Ritchie; Henry Rodriguez; Pothur R Srinivas; R Reid Townsend; Jennifer Van Eyk; Gordon Whiteley; Arun Wiita; Susan Weintraub
Journal:  Mol Cell Proteomics       Date:  2014-01-17       Impact factor: 5.911

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  15 in total

Review 1.  Proteomics in Inflammatory Bowel Disease: Approach Using Animal Models.

Authors:  Fadi H Mourad; Yunki Yau; Valerie C Wasinger; Rupert W Leong
Journal:  Dig Dis Sci       Date:  2017-07-17       Impact factor: 3.199

Review 2.  Mass spectrometry: A platform for biomarker discovery and validation for Alzheimer's and Parkinson's diseases.

Authors:  Eugene M Cilento; Lorrain Jin; Tessandra Stewart; Min Shi; Lifu Sheng; Jing Zhang
Journal:  J Neurochem       Date:  2019-01-31       Impact factor: 5.372

3.  Proteomic Analysis of Serum Amyloid A as a Potential Marker in Intestinal Behçet's Disease.

Authors:  Hyun Jung Lee; Jae Hyun Kim; Seung Won Kim; Hyun Ah Joo; Hye Won Lee; You Sun Kim; Soo Jung Park; Sung Pil Hong; Tae Il Kim; Won Ho Kim; Young-Ho Kim; Jae Hee Cheon
Journal:  Dig Dis Sci       Date:  2017-05-18       Impact factor: 3.199

4.  Poor Clearance of Free Hemoglobin Due to Lower Active Haptoglobin Availability is Associated with Osteoarthritis Inflammation.

Authors:  Ashish Sarkar; Vijay Kumar; Rajesh Malhotra; Hemant Pandit; Elena Jones; Frederique Ponchel; Sagarika Biswas
Journal:  J Inflamm Res       Date:  2021-03-18

5.  Differential Proteomics Analysis of Colonic Tissues in Patients of Slow Transit Constipation.

Authors:  Songlin Wan; Weicheng Liu; Cuiping Tian; Xianghai Ren; Zhao Ding; Qun Qian; Congqing Jiang; Yunhua Wu
Journal:  Biomed Res Int       Date:  2016-04-30       Impact factor: 3.411

6.  Personalized Proteomics: The Future of Precision Medicine.

Authors:  Trevor T Duarte; Charles T Spencer
Journal:  Proteomes       Date:  2016-10-01

Review 7.  Thymic function in the regulation of T cells, and molecular mechanisms underlying the modulation of cytokines and stress signaling (Review).

Authors:  Fenggen Yan; Xiumei Mo; Junfeng Liu; Siqi Ye; Xing Zeng; Dacan Chen
Journal:  Mol Med Rep       Date:  2017-09-19       Impact factor: 2.952

8.  Salivary exosomal PSMA7: a promising biomarker of inflammatory bowel disease.

Authors:  Xiaowen Zheng; Feng Chen; Qian Zhang; Yulan Liu; Peng You; Shan Sun; Jiuxiang Lin; Ning Chen
Journal:  Protein Cell       Date:  2017-05-18       Impact factor: 14.870

9.  Herb-partitioned moxibustion alleviates colon injuries in ulcerative colitis rats.

Authors:  Dan Zhang; Yan-Bo Ren; Kai Wei; Jue Hong; Yan-Ting Yang; Li-Jie Wu; Ji Zhang; Zheng Shi; Huan-Gan Wu; Xiao-Peng Ma
Journal:  World J Gastroenterol       Date:  2018-08-14       Impact factor: 5.742

Review 10.  Proteomics and Lipidomics in Inflammatory Bowel Disease Research: From Mechanistic Insights to Biomarker Identification.

Authors:  Bjoern Titz; Raffaella M Gadaleta; Giuseppe Lo Sasso; Ashraf Elamin; Kim Ekroos; Nikolai V Ivanov; Manuel C Peitsch; Julia Hoeng
Journal:  Int J Mol Sci       Date:  2018-09-15       Impact factor: 5.923

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