Literature DB >> 26896977

FALCON: A method for flexible adaptation of local coordinates of nuclei.

Carolin König1, Mads Bøttger Hansen1, Ian H Godtliebsen1, Ove Christiansen1.   

Abstract

We present a flexible scheme for calculating vibrational rectilinear coordinates with well-defined strict locality on a certain set of atoms. Introducing a method for Flexible Adaption of Local COordinates of Nuclei (FALCON) we show how vibrational subspaces can be "grown" in an adaptive manner. Subspace Hessian matrices are set up and used to calculate and analyze vibrational modes and frequencies. FALCON coordinates can more generally be used to construct vibrational coordinates for describing local and (semi-local) interacting modes with desired features. For instance, spatially local vibrations can be approximately described as internal motion within only a group of atoms and delocalized modes can be approximately expressed as relative motions of rigid groups of atoms. The FALCON method can support efficiency in the calculation and analysis of vibrational coordinates and energies in the context of harmonic and anharmonic calculations. The features of this method are demonstrated on a few small molecules, i.e., formylglycine, coumarin, and dimethylether as well as for the amide-I band and low-frequency modes of alanine oligomers and alpha conotoxin.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 26896977     DOI: 10.1063/1.4941846

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  3 in total

1.  Static Electron Correlation in Anharmonic Molecular Vibrations: A Hybrid TAO-DFT Study.

Authors:  Magnus W D Hanson-Heine
Journal:  J Phys Chem A       Date:  2022-09-27       Impact factor: 2.944

2.  Probing vibrational coupling via a grid-based quantum approach-an efficient strategy for accurate calculations of localized normal modes in solid-state systems.

Authors:  Ulrich Kuenzer; Martin Klotz; Thomas S Hofer
Journal:  J Comput Chem       Date:  2018-10-20       Impact factor: 3.376

3.  Anharmonic Vibrational Analysis of Biomolecules and Solvated Molecules Using Hybrid QM/MM Computations.

Authors:  Kiyoshi Yagi; Kenta Yamada; Chigusa Kobayashi; Yuji Sugita
Journal:  J Chem Theory Comput       Date:  2019-02-21       Impact factor: 6.006

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.