Literature DB >> 26896443

Starting too soon: upstream reading frames repress downstream translation.

Anna M McGeachy1, Nicholas T Ingolia2.   

Abstract

Upstream open reading frames (uORFs) are known to regulate a few specific transcripts, and recent computational and experimental studies have suggested candidate uORF regulation across the genome. In this issue, Johnstone et al (2016) use ribosome profiling to identify translated uORFs and measure their effects on downstream translation. Furthermore, they show that regulatory uORFs are conserved across species and subject to selective constraint. Recognizing the potential of uORFs in regulating translation expands our understanding of the dynamic regulation of gene expression.

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Year:  2016        PMID: 26896443      PMCID: PMC4818767          DOI: 10.15252/embj.201693946

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  12 in total

1.  Ribosome profiling reveals resemblance between long non-coding RNAs and 5' leaders of coding RNAs.

Authors:  Guo-Liang Chew; Andrea Pauli; John L Rinn; Aviv Regev; Alexander F Schier; Eivind Valen
Journal:  Development       Date:  2013-05-22       Impact factor: 6.868

2.  Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation.

Authors:  Ariel A Bazzini; Timothy G Johnstone; Romain Christiano; Sebastian D Mackowiak; Benedikt Obermayer; Elizabeth S Fleming; Charles E Vejnar; Miler T Lee; Nikolaus Rajewsky; Tobias C Walther; Antonio J Giraldez
Journal:  EMBO J       Date:  2014-04-04       Impact factor: 11.598

3.  Translational control via protein-regulated upstream open reading frames.

Authors:  Jan Medenbach; Markus Seiler; Matthias W Hentze
Journal:  Cell       Date:  2011-06-10       Impact factor: 41.582

4.  High-resolution view of the yeast meiotic program revealed by ribosome profiling.

Authors:  Gloria A Brar; Moran Yassour; Nir Friedman; Aviv Regev; Nicholas T Ingolia; Jonathan S Weissman
Journal:  Science       Date:  2011-12-22       Impact factor: 47.728

Review 5.  Regulation of translation initiation in eukaryotes: mechanisms and biological targets.

Authors:  Nahum Sonenberg; Alan G Hinnebusch
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

6.  Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans.

Authors:  Sarah E Calvo; David J Pagliarini; Vamsi K Mootha
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-16       Impact factor: 11.205

7.  Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.

Authors:  Nicholas T Ingolia; Sina Ghaemmaghami; John R S Newman; Jonathan S Weissman
Journal:  Science       Date:  2009-02-12       Impact factor: 47.728

8.  Ribosome profiling reveals pervasive translation outside of annotated protein-coding genes.

Authors:  Nicholas T Ingolia; Gloria A Brar; Noam Stern-Ginossar; Michael S Harris; Gaëlle J S Talhouarne; Sarah E Jackson; Mark R Wills; Jonathan S Weissman
Journal:  Cell Rep       Date:  2014-08-21       Impact factor: 9.423

9.  Roles for transcript leaders in translation and mRNA decay revealed by transcript leader sequencing.

Authors:  Joshua A Arribere; Wendy V Gilbert
Journal:  Genome Res       Date:  2013-04-11       Impact factor: 9.043

10.  The small molecule ISRIB reverses the effects of eIF2α phosphorylation on translation and stress granule assembly.

Authors:  Carmela Sidrauski; Anna M McGeachy; Nicholas T Ingolia; Peter Walter
Journal:  Elife       Date:  2015-02-26       Impact factor: 8.140

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  2 in total

1.  Multilevel regulation of the glass locus during Drosophila eye development.

Authors:  Cornelia Fritsch; F Javier Bernardo-Garcia; Tim-Henning Humberg; Abhishek Kumar Mishra; Sara Miellet; Silvia Almeida; Michael V Frochaux; Bart Deplancke; Armin Huber; Simon G Sprecher
Journal:  PLoS Genet       Date:  2019-07-12       Impact factor: 5.917

2.  Discovery of a small protein-encoding cis-regulatory overlapping gene of the tumor suppressor gene Scribble in humans.

Authors:  Yuhta Nomura; Naoshi Dohmae
Journal:  Commun Biol       Date:  2021-09-17
  2 in total

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