Literature DB >> 26895387

Conformation-Selective Analogues of Dasatinib Reveal Insight into Kinase Inhibitor Binding and Selectivity.

Frank E Kwarcinski, Kristoffer R Brandvold, Sameer Phadke, Omar M Beleh, Taylor K Johnson, Jennifer L Meagher, Markus A Seeliger1, Jeanne A Stuckey, Matthew B Soellner.   

Abstract

In the kinase field, there are many widely held tenets about conformation-selective inhibitors that have yet to be validated using controlled experiments. We have designed, synthesized, and characterized a series of kinase inhibitor analogues of dasatinib, an FDA-approved kinase inhibitor that binds the active conformation. This inhibitor series includes two Type II inhibitors that bind the DFG-out inactive conformation and two inhibitors that bind the αC-helix-out inactive conformation. Using this series of compounds, we analyze the impact that conformation-selective inhibitors have on target binding and kinome-wide selectivity.

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Year:  2016        PMID: 26895387      PMCID: PMC7306399          DOI: 10.1021/acschembio.5b01018

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  56 in total

Review 1.  The protein kinase complement of the human genome.

Authors:  G Manning; D B Whyte; R Martinez; T Hunter; S Sudarsanam
Journal:  Science       Date:  2002-12-06       Impact factor: 47.728

2.  Activation state-dependent binding of small molecule kinase inhibitors: structural insights from biochemistry.

Authors:  Lisa M Wodicka; Pietro Ciceri; Mindy I Davis; Jeremy P Hunt; Mark Floyd; Sara Salerno; Xuequn H Hua; Julia M Ford; Robert C Armstrong; Patrick P Zarrinkar; Daniel K Treiber
Journal:  Chem Biol       Date:  2010-11-24

3.  Discovery of selective irreversible inhibitors for Bruton's tyrosine kinase.

Authors:  Zhengying Pan; Heleen Scheerens; Shyr-Jiann Li; Brian E Schultz; Paul A Sprengeler; L Chuck Burrill; Rohan V Mendonca; Michael D Sweeney; Keana C K Scott; Paul G Grothaus; Douglas A Jeffery; Jill M Spoerke; Lee A Honigberg; Peter R Young; Stacie A Dalrymple; James T Palmer
Journal:  ChemMedChem       Date:  2007-01       Impact factor: 3.466

Review 4.  The development of imatinib as a therapeutic agent for chronic myeloid leukemia.

Authors:  Michael Deininger; Elisabeth Buchdunger; Brian J Druker
Journal:  Blood       Date:  2004-12-23       Impact factor: 22.113

5.  A small molecule-kinase interaction map for clinical kinase inhibitors.

Authors:  Miles A Fabian; William H Biggs; Daniel K Treiber; Corey E Atteridge; Mihai D Azimioara; Michael G Benedetti; Todd A Carter; Pietro Ciceri; Philip T Edeen; Mark Floyd; Julia M Ford; Margaret Galvin; Jay L Gerlach; Robert M Grotzfeld; Sanna Herrgard; Darren E Insko; Michael A Insko; Andiliy G Lai; Jean-Michel Lélias; Shamal A Mehta; Zdravko V Milanov; Anne Marie Velasco; Lisa M Wodicka; Hitesh K Patel; Patrick P Zarrinkar; David J Lockhart
Journal:  Nat Biotechnol       Date:  2005-02-13       Impact factor: 54.908

6.  Prevention of MKK6-dependent activation by binding to p38alpha MAP kinase.

Authors:  Jane E Sullivan; Geoffrey A Holdgate; Douglas Campbell; David Timms; Stefan Gerhardt; Jason Breed; Alexander L Breeze; Alun Bermingham; Richard A Pauptit; Richard A Norman; Kevin J Embrey; Jon Read; Wendy S VanScyoc; Walter H J Ward
Journal:  Biochemistry       Date:  2005-12-20       Impact factor: 3.162

7.  Substrate activity screening with kinases: discovery of small-molecule substrate-competitive c-Src inhibitors.

Authors:  Meghan E Breen; Michael E Steffey; Eric J Lachacz; Frank E Kwarcinski; Christel C Fox; Matthew B Soellner
Journal:  Angew Chem Int Ed Engl       Date:  2014-05-02       Impact factor: 15.336

8.  Structural mechanism for STI-571 inhibition of abelson tyrosine kinase.

Authors:  T Schindler; W Bornmann; P Pellicena; W T Miller; B Clarkson; J Kuriyan
Journal:  Science       Date:  2000-09-15       Impact factor: 47.728

Review 9.  Disabling Abl-perspectives on Abl kinase regulation and cancer therapeutics.

Authors:  Charles L Sawyers
Journal:  Cancer Cell       Date:  2002-02       Impact factor: 31.743

10.  Inhibition of p38 MAP kinase by utilizing a novel allosteric binding site.

Authors:  Christopher Pargellis; Liang Tong; Laurie Churchill; Pier F Cirillo; Thomas Gilmore; Anne G Graham; Peter M Grob; Eugene R Hickey; Neil Moss; Susan Pav; John Regan
Journal:  Nat Struct Biol       Date:  2002-04
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  20 in total

1.  How ATP-Competitive Inhibitors Allosterically Modulate Tyrosine Kinases That Contain a Src-like Regulatory Architecture.

Authors:  Linglan Fang; Jessica Vilas-Boas; Sujata Chakraborty; Zachary E Potter; Ames C Register; Markus A Seeliger; Dustin J Maly
Journal:  ACS Chem Biol       Date:  2020-06-23       Impact factor: 5.100

Review 2.  Mechanisms of Cardiovascular Toxicity of BCR-ABL1 Tyrosine Kinase Inhibitors in Chronic Myelogenous Leukemia.

Authors:  Dakota Gustafson; Jason E Fish; Jeffrey H Lipton; Nazanin Aghel
Journal:  Curr Hematol Malig Rep       Date:  2020-02       Impact factor: 3.952

3.  Selective Proteolysis to Study the Global Conformation and Regulatory Mechanisms of c-Src Kinase.

Authors:  Michael P Agius; Kristin S Ko; Taylor K Johnson; Frank E Kwarcinski; Sameer Phadke; Eric J Lachacz; Matthew B Soellner
Journal:  ACS Chem Biol       Date:  2019-07-09       Impact factor: 5.100

4.  Targeting Dynamic ATP-Binding Site Features Allows Discrimination between Highly Homologous Protein Kinases.

Authors:  Sujata Chakraborty; Takayuki Inukai; Linglan Fang; Martin Golkowski; Dustin J Maly
Journal:  ACS Chem Biol       Date:  2019-05-13       Impact factor: 5.100

5.  Leveraging Compound Promiscuity to Identify Targetable Cysteines within the Kinome.

Authors:  Suman Rao; Deepak Gurbani; Guangyan Du; Robert A Everley; Christopher M Browne; Apirat Chaikuad; Li Tan; Martin Schröder; Sudershan Gondi; Scott B Ficarro; Taebo Sim; Nam Doo Kim; Matthew J Berberich; Stefan Knapp; Jarrod A Marto; Kenneth D Westover; Peter K Sorger; Nathanael S Gray
Journal:  Cell Chem Biol       Date:  2019-04-11       Impact factor: 8.116

6.  Conquering the challenges of genotypic and phenotypic tumor heterogeneity to realize the promise of personalized cancer therapy: the role of academia.

Authors:  Sofia Merajver; Sameer Phadke; Matthew Soellner
Journal:  Trans Am Clin Climatol Assoc       Date:  2017

7.  Insights into the modular design of kinase inhibitors and application to Abl and Axl.

Authors:  Sameer Phadke; Lluis Lopez-Barcons; Nathalie Vandecan; Zhifen Wu; Taylor K Johnson; Eric J Lachacz; Sofia D Merajver; Matthew B Soellner
Journal:  RSC Med Chem       Date:  2021-11-05

8.  Structural and Biochemical Basis for Intracellular Kinase Inhibition by Src-specific Peptidic Macrocycles.

Authors:  Saadat Aleem; George Georghiou; Ralph E Kleiner; Kip Guja; Barbara P Craddock; Agatha Lyczek; Alix I Chan; Miguel Garcia-Diaz; W Todd Miller; David R Liu; Markus A Seeliger
Journal:  Cell Chem Biol       Date:  2016-09-01       Impact factor: 8.116

9.  Parallel Chemoselective Profiling for Mapping Protein Structure.

Authors:  Zachary E Potter; Ho-Tak Lau; Sujata Chakraborty; Linglan Fang; Miklos Guttman; Shao-En Ong; Douglas M Fowler; Dustin J Maly
Journal:  Cell Chem Biol       Date:  2020-07-09       Impact factor: 8.116

10.  Conformational states dynamically populated by a kinase determine its function.

Authors:  Tao Xie; Tamjeed Saleh; Paolo Rossi; Charalampos G Kalodimos
Journal:  Science       Date:  2020-10-01       Impact factor: 47.728

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