Literature DB >> 26894068

The Application of Pulsed Field Gel Electrophoresis in Clinical Studies.

Elaheh Gholami Parizad1, Eskandar Gholami Parizad2, Azar Valizadeh1.   

Abstract

Pulsed-field gel electrophoresis is a method applied in separating large segments of deoxyribonucleotide using an alternating and cross field. In a uniform magnetic field, components larger than 50kb pass a route through the gel and since the movement of DNA (Deoxyribonucleic acid) molecules are in a Zigzag form, separation of DNAs as bands carried out better via gel. PFGE in microbiology is a standard method which is used for typing of bacteria. It is also a very useful tool in epidemiological studies and gene mapping in microbes and mammalian cell, also motivated development of large-insert cloning system such as bacterial and yeast artifical chromosomes. In this method, close and similar species in terms of genetic patterns show alike profiles regarding DNA separation, and those ones which don't have similarity or are less similar, reveal different separation profiles. So this feature can be used to determine the common species as the prevalence agent of a disease. PFGE can be utilized for monitoring and evaluating different micro-organisms in clinical samples and existing ones in soil and water. This method can also be a reliable and standard method in vaccine preparation. In recent decades, PFGE is highly regarded as a powerful tool in control, prevention and monitoring diseases in different populations.

Entities:  

Keywords:  Clinical research tool; DNA size; Typing

Year:  2016        PMID: 26894068      PMCID: PMC4740595          DOI: 10.7860/JCDR/2016/15718.7043

Source DB:  PubMed          Journal:  J Clin Diagn Res        ISSN: 0973-709X


  27 in total

1.  Pulsed-field gel electrophoresis for disease monitoring and control.

Authors:  John Besser
Journal:  Methods Mol Biol       Date:  2015

2.  Provirophages and transpovirons as the diverse mobilome of giant viruses.

Authors:  Christelle Desnues; Bernard La Scola; Natalya Yutin; Ghislain Fournous; Catherine Robert; Saïd Azza; Priscilla Jardot; Sonia Monteil; Angélique Campocasso; Eugene V Koonin; Didier Raoult
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-15       Impact factor: 11.205

3.  Electrophoretic separations of large DNA molecules by periodic inversion of the electric field.

Authors:  G F Carle; M Frank; M V Olson
Journal:  Science       Date:  1986-04-04       Impact factor: 47.728

4.  Separation of chromosomal DNA molecules from yeast by orthogonal-field-alternation gel electrophoresis.

Authors:  G F Carle; M V Olson
Journal:  Nucleic Acids Res       Date:  1984-07-25       Impact factor: 16.971

5.  Evaluation of pulsed-field gel electrophoresis in epidemiological investigations of meningococcal disease outbreaks caused by Neisseria meningitidis serogroup C.

Authors:  T Popovic; S Schmink; N A Rosenstein; G W Ajello; M W Reeves; B Plikaytis; S B Hunter; E M Ribot; D Boxrud; M L Tondella; C Kim; C Noble; E Mothershed; J Besser; B A Perkins
Journal:  J Clin Microbiol       Date:  2001-01       Impact factor: 5.948

6.  Pulsed-field gel electrophoresis diversity of human and bovine clinical Salmonella isolates.

Authors:  Yeşim Soyer; Samuel D Alcaine; Dainna J Schoonmaker-Bopp; Timothy P Root; Lorin D Warnick; Patrick L McDonough; Nellie B Dumas; Yrjo T Gröhn; Martin Wiedmann
Journal:  Foodborne Pathog Dis       Date:  2010-06       Impact factor: 3.171

7.  The key role of pulsed-field gel electrophoresis in investigation of a large multiserotype and multistate food-borne outbreak of Salmonella infections centered in Pennsylvania.

Authors:  Carol H Sandt; Donna A Krouse; Charles R Cook; Amy L Hackman; Wayne A Chmielecki; Nancy G Warren
Journal:  J Clin Microbiol       Date:  2006-09       Impact factor: 5.948

8.  Separation of yeast chromosome-sized DNAs by pulsed field gradient gel electrophoresis.

Authors:  D C Schwartz; C R Cantor
Journal:  Cell       Date:  1984-05       Impact factor: 41.582

9.  Diversity of pulsed-field gel electrophoresis patterns of cereulide-producing isolates of Bacillus cereus and Bacillus weihenstephanensis.

Authors:  Virginie Castiaux; Elise N'guessan; Izabela Swiecicka; Laurence Delbrassinne; Katelijne Dierick; Jacques Mahillon
Journal:  FEMS Microbiol Lett       Date:  2014-03-31       Impact factor: 2.742

10.  Application of Pulsed Field Gel Electrophoresis for Study of Genetic Diversity in Mycobacterium tuberculosis Strains Isolated From Tuberculosis Patients.

Authors:  Azar Dokht Khosravi; Shideh Vatani; Mohammad Mehdi Feizabadi; Effat Abasi Montazeri; Abbas Jolodar
Journal:  Jundishapur J Microbiol       Date:  2014-05-01       Impact factor: 0.747

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  6 in total

1.  Quantitation of Integrated HIV Provirus by Pulsed-Field Gel Electrophoresis and Droplet Digital PCR.

Authors:  Steven M Lada; Karissa Huang; D Jake VanBelzen; Luis J Montaner; Una O'Doherty; Douglas D Richman
Journal:  J Clin Microbiol       Date:  2018-11-27       Impact factor: 5.948

2.  Molecular Characterization of Antibiotic Resistance and Genetic Diversity of Klebsiella pneumoniae Strains.

Authors:  Bahareh Arabzadeh; Zeynab Ahmadi; Reza Ranjbar
Journal:  Can J Infect Dis Med Microbiol       Date:  2022-06-21       Impact factor: 2.585

Review 3.  Whole-Genome Sequencing of Bacterial Pathogens: the Future of Nosocomial Outbreak Analysis.

Authors:  Scott Quainoo; Jordy P M Coolen; Sacha A F T van Hijum; Martijn A Huynen; Willem J G Melchers; Willem van Schaik; Heiman F L Wertheim
Journal:  Clin Microbiol Rev       Date:  2017-10       Impact factor: 26.132

4.  Evaluation and SNP typing of DNA from ultraviolet-irradiated human bloodstains using TaqMan assay.

Authors:  Jian Tie; Seisaku Uchigasaki; Eiji Isobe
Journal:  Sci Rep       Date:  2021-04-13       Impact factor: 4.379

5.  Genetic diversity of colistin resistance Nosocomial Acinetobacter baumannii strains from Iran.

Authors:  Maryam Seyyedi; Reza Shapouri; Habib Zeighami; Leili Shokoohizadeh
Journal:  J Res Med Sci       Date:  2021-12-22       Impact factor: 1.852

6.  A Predominant Clonal Thromboembolic Meningoencephalitis Group of Histophilus somni Assigned by Major Outer Membrane Protein Gene Sequencing and Pulsed-Field Gel Electrophoresis.

Authors:  Yuichi Ueno; Chie Teratani; Wakako Misumi; Kaori Hoshinoo; Daisuke Takamatsu; Yuichi Tagawa; Ken Katsuda
Journal:  Front Vet Sci       Date:  2018-09-19
  6 in total

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