Literature DB >> 26891482

Reconstructing Curvilinear Networks Using Path Classifiers and Integer Programming.

Engin Turetken, Fethallah Benmansour, Bjoern Andres, Przemyslaw Glowacki, Hanspeter Pfister, Pascal Fua.   

Abstract

We propose a novel approach to automated delineation of curvilinear structures that form complex and potentially loopy networks. By representing the image data as a graph of potential paths, we first show how to weight these paths using discriminatively-trained classifiers that are both robust and generic enough to be applied to very different imaging modalities. We then present an Integer Programming approach to finding the optimal subset of paths, subject to structural and topological constraints that eliminate implausible solutions. Unlike earlier approaches that assume a tree topology for the networks, ours explicitly models the fact that the networks may contain loops, and can reconstruct both cyclic and acyclic ones. We demonstrate the effectiveness of our approach on a variety of challenging datasets including aerial images of road networks and micrographs of neural arbors, and show that it outperforms state-of-the-art techniques.

Year:  2016        PMID: 26891482     DOI: 10.1109/TPAMI.2016.2519025

Source DB:  PubMed          Journal:  IEEE Trans Pattern Anal Mach Intell        ISSN: 0098-5589            Impact factor:   6.226


  7 in total

1.  Automatic Graph-Based Modeling of Brain Microvessels Captured With Two-Photon Microscopy.

Authors:  Rafat Damseh; Philippe Pouliot; Louis Gagnon; Sava Sakadzic; David Boas; Farida Cheriet; Frederic Lesage
Journal:  IEEE J Biomed Health Inform       Date:  2018-12-03       Impact factor: 5.772

2.  SparseTracer: the Reconstruction of Discontinuous Neuronal Morphology in Noisy Images.

Authors:  Shiwei Li; Hang Zhou; Tingwei Quan; Jing Li; Yuxin Li; Anan Li; Qingming Luo; Hui Gong; Shaoqun Zeng
Journal:  Neuroinformatics       Date:  2017-04

3.  Multiquadric Spline-Based Interactive Segmentation of Vascular Networks.

Authors:  Sachin Meena; V B Surya Prasath; Yasmin M Kassim; Richard J Maude; Olga V Glinskii; Vladislav V Glinsky; Virginia H Huxley; Kannappan Palaniappan
Journal:  Annu Int Conf IEEE Eng Med Biol Soc       Date:  2016-08

4.  Heterogeneities in Axonal Structure and Transporter Distribution Lower Dopamine Reuptake Efficiency.

Authors:  Cihan Kaya; Mary H Cheng; Ethan R Block; Tom M Bartol; Terrence J Sejnowski; Alexander Sorkin; James R Faeder; Ivet Bahar
Journal:  eNeuro       Date:  2018-02-05

5.  Nilpotent Approximations of Sub-Riemannian Distances for Fast Perceptual Grouping of Blood Vessels in 2D and 3D.

Authors:  Erik J Bekkers; Da Chen; Jorg M Portegies
Journal:  J Math Imaging Vis       Date:  2018-01-25       Impact factor: 1.627

6.  Deep iterative vessel segmentation in OCT angiography.

Authors:  Theodoros Pissas; Edward Bloch; M Jorge Cardoso; Blanca Flores; Odysseas Georgiadis; Sepehr Jalali; Claudio Ravasio; Danail Stoyanov; Lyndon Da Cruz; Christos Bergeles
Journal:  Biomed Opt Express       Date:  2020-04-10       Impact factor: 3.732

7.  Biological network growth in complex environments: A computational framework.

Authors:  Torsten Johann Paul; Philip Kollmannsberger
Journal:  PLoS Comput Biol       Date:  2020-11-30       Impact factor: 4.475

  7 in total

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