Literature DB >> 26891005

From polyadenylation to splicing: Dual role for mRNA 3' end formation factors.

Ashish Misra1, Michael R Green1.   

Abstract

Recent genome-wide protein-RNA interaction studies have significantly reshaped our understanding of the role of mRNA 3' end formation factors in RNA biology. Originally thought to function solely in mediating cleavage and polyadenylation of mRNAs during their maturation, 3' end formation factors have now been shown to play a role in alternative splicing, even at internal introns--an unanticipated role for factors thought only to act at the 3' end of the mRNA. Here, we discuss the recent advances in our understanding of the role of 3' end formation factors in promoting global changes in alternative splicing at internal exon-intron junctions and how they act as cofactors for well known splicing regulators. Additionally, we review the mechanism by which these factors affect the recruitment of early intron recognition components to the 5' and 3' splice site. Our understanding of the roles of 3' end formation factors is still evolving, and the final picture might be more complex than originally envisioned.

Keywords:  Alternative splicing; CPSF; SYMPK; mRNA 3’ end processing; polyadenylation

Mesh:

Substances:

Year:  2015        PMID: 26891005      PMCID: PMC4829302          DOI: 10.1080/15476286.2015.1112490

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  28 in total

1.  The 30-kD subunit of mammalian cleavage and polyadenylation specificity factor and its yeast homolog are RNA-binding zinc finger proteins.

Authors:  S M Barabino; W Hübner; A Jenny; L Minvielle-Sebastia; W Keller
Journal:  Genes Dev       Date:  1997-07-01       Impact factor: 11.361

2.  Direct interactions between subunits of CPSF and the U2 snRNP contribute to the coupling of pre-mRNA 3' end processing and splicing.

Authors:  Andrea Kyburz; Arno Friedlein; Hanno Langen; Walter Keller
Journal:  Mol Cell       Date:  2006-07-21       Impact factor: 17.970

3.  Involvement of the carboxyl terminus of vertebrate poly(A) polymerase in U1A autoregulation and in the coupling of splicing and polyadenylation.

Authors:  S I Gunderson; S Vagner; M Polycarpou-Schwarz; I W Mattaj
Journal:  Genes Dev       Date:  1997-03-15       Impact factor: 11.361

4.  RNA recognition by the human polyadenylation factor CstF.

Authors:  Y Takagaki; J L Manley
Journal:  Mol Cell Biol       Date:  1997-07       Impact factor: 4.272

Review 5.  Exon recognition in vertebrate splicing.

Authors:  S M Berget
Journal:  J Biol Chem       Date:  1995-02-10       Impact factor: 5.157

6.  A CPSF-73 homologue is required for cell cycle progression but not cell growth and interacts with a protein having features of CPSF-100.

Authors:  Zbigniew Dominski; Xiao-Cui Yang; Matthew Purdy; Eric J Wagner; William F Marzluff
Journal:  Mol Cell Biol       Date:  2005-02       Impact factor: 4.272

7.  Cleavage factor II of Saccharomyces cerevisiae contains homologues to subunits of the mammalian Cleavage/ polyadenylation specificity factor and exhibits sequence-specific, ATP-dependent interaction with precursor RNA.

Authors:  J Zhao; M M Kessler; C L Moore
Journal:  J Biol Chem       Date:  1997-04-18       Impact factor: 5.157

8.  Global Promotion of Alternative Internal Exon Usage by mRNA 3' End Formation Factors.

Authors:  Ashish Misra; Jianhong Ou; Lihua J Zhu; Michael R Green
Journal:  Mol Cell       Date:  2015-04-23       Impact factor: 17.970

9.  Alternative isoform regulation in human tissue transcriptomes.

Authors:  Eric T Wang; Rickard Sandberg; Shujun Luo; Irina Khrebtukova; Lu Zhang; Christine Mayr; Stephen F Kingsmore; Gary P Schroth; Christopher B Burge
Journal:  Nature       Date:  2008-11-27       Impact factor: 49.962

10.  HITS-CLIP yields genome-wide insights into brain alternative RNA processing.

Authors:  Donny D Licatalosi; Aldo Mele; John J Fak; Jernej Ule; Melis Kayikci; Sung Wook Chi; Tyson A Clark; Anthony C Schweitzer; John E Blume; Xuning Wang; Jennifer C Darnell; Robert B Darnell
Journal:  Nature       Date:  2008-11-02       Impact factor: 49.962

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  13 in total

Review 1.  The determinants of alternative RNA splicing in human cells.

Authors:  Tatsiana V Ramanouskaya; Vasily V Grinev
Journal:  Mol Genet Genomics       Date:  2017-07-13       Impact factor: 3.291

2.  The Nonstructural NS1 Protein of Influenza Viruses Modulates TP53 Splicing through Host Factor CPSF4.

Authors:  Manuel Rosa-Calatrava; Olivier Terrier; Julia Dubois; Aurélien Traversier; Thomas Julien; Blandine Padey; Bruno Lina; Jean-Christophe Bourdon; Virginie Marcel; Guy Boivin
Journal:  J Virol       Date:  2019-03-21       Impact factor: 5.103

3.  The Composition of the Arabidopsis RNA Polymerase II Transcript Elongation Complex Reveals the Interplay between Elongation and mRNA Processing Factors.

Authors:  Wojciech Antosz; Alexander Pfab; Hans F Ehrnsberger; Philipp Holzinger; Karin Köllen; Simon A Mortensen; Astrid Bruckmann; Thomas Schubert; Gernot Längst; Joachim Griesenbeck; Veit Schubert; Marion Grasser; Klaus D Grasser
Journal:  Plant Cell       Date:  2017-03-28       Impact factor: 11.277

4.  CONSTITUTIVE EXPRESSER OF PATHOGENESIS-RELATED GENES 5 is an RNA-binding protein controlling plant immunity via an RNA processing complex.

Authors:  Shun Peng; Dongbei Guo; Yuan Guo; Heyu Zhao; Jun Mei; Yakun Han; Rui Guan; Tianhua Wang; Teng Song; Keke Sun; Yunhan Liu; Ting Mao; Huan Chang; Jingshi Xue; Yingfan Cai; Dong Chen; Shui Wang
Journal:  Plant Cell       Date:  2022-04-26       Impact factor: 12.085

Review 5.  Integration of mRNP formation and export.

Authors:  Petra Björk; Lars Wieslander
Journal:  Cell Mol Life Sci       Date:  2017-03-17       Impact factor: 9.261

6.  A snoRNA modulates mRNA 3' end processing and regulates the expression of a subset of mRNAs.

Authors:  Chunliu Huang; Junjie Shi; Yibin Guo; Weijun Huang; Shanshan Huang; Siqi Ming; Xingui Wu; Rui Zhang; Junjun Ding; Wei Zhao; Jie Jia; Xi Huang; Andy Peng Xiang; Yongsheng Shi; Chengguo Yao
Journal:  Nucleic Acids Res       Date:  2017-09-06       Impact factor: 16.971

7.  Involved microRNAs in alternative polyadenylation intervene in breast cancer via regulation of cleavage factor "CFIm25".

Authors:  Mona Tamaddon; Gelareh Shokri; Seyed Mohammad Ali Hosseini Rad; Iman Rad; Àmirnader Emami Razavi; Fatemeh Kouhkan
Journal:  Sci Rep       Date:  2020-07-14       Impact factor: 4.379

8.  HNRNPA1-mediated 3' UTR length changes of HN1 contributes to cancer- and senescence-associated phenotypes.

Authors:  Qi Jia; Hongbo Nie; Peng Yu; Baiyun Xie; Chenji Wang; Fu Yang; Gang Wei; Ting Ni
Journal:  Aging (Albany NY)       Date:  2019-06-30       Impact factor: 5.682

Review 9.  A Fresh Look at Huntingtin mRNA Processing in Huntington's Disease.

Authors:  Lindsay Romo; Emily S Mohn; Neil Aronin
Journal:  J Huntingtons Dis       Date:  2018

Review 10.  Polyadenylation and nuclear export of mRNAs.

Authors:  Murray Stewart
Journal:  J Biol Chem       Date:  2019-01-25       Impact factor: 5.157

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