| Literature DB >> 26888032 |
Johanna Yletyinen1, Örjan Bodin2, Benjamin Weigel3, Marie C Nordström3, Erik Bonsdorff3, Thorsten Blenckner2.
Abstract
Species composition and habitats are changing at unprecedented rates in the world's oceans, potentially causing entire food webs to shift to structurally and functionally different regimes. Despite the severity of these regime shifts, elucidating the precise nature of their underlying processes has remained difficult. We address this challenge with a new analytic approach to detect and assess the relative strength of different driving processes in food webs. Our study draws on complexity theory, and integrates the network-centric exponential random graph modelling (ERGM) framework developed within the social sciences with community ecology. In contrast to previous research, this approach makes clear assumptions of direction of causality and accommodates a dynamic perspective on the emergence of food webs. We apply our approach to analysing food webs of the Baltic Sea before and after a previously reported regime shift. Our results show that the dominant food web processes have remained largely the same, although we detect changes in their magnitudes. The results indicate that the reported regime shift may not be a system-wide shift, but instead involve a limited number of species. Our study emphasizes the importance of community-wide analysis on marine regime shifts and introduces a novel approach to examine food webs.Entities:
Keywords: Baltic Sea; complex adaptive systems; exponential random graph model; food web; motifs; regime shift
Mesh:
Year: 2016 PMID: 26888032 PMCID: PMC4810827 DOI: 10.1098/rspb.2015.2569
Source DB: PubMed Journal: Proc Biol Sci ISSN: 0962-8452 Impact factor: 5.349
Figure 1.A motif as a network substructure.
Species interaction processes, the corresponding motifs and ERGM configurations. The names of the ERGM configurations as they are called in MPNET are inside parentheses. Note that the ERGM configurations used here are configurations that consist of a series of simpler configurations, the ‘alternate’ version of a configuration that still captures the same type of underlying process as in the more bare-bone configuration, see further [12]. The reason for using the alternate configurations lies in the degree heterogeneity: in empirical networks triangles tend to clump together instead of being evenly distributed throughout the network, thus alternating configurations improve the ability of ERGM to reproduce empirical network structure improves significantly [12,13].
Figure 2.The driving configurations of the Baltic Sea ERGMs, presented here as parameter estimates. ‘App c’: apparative competition, ‘Exp c’: exploitative competition, ‘Gen’: generalist, ‘HPS': highly predated species, ‘Key’: keystone species, ‘Omn’: omnivory, ‘Tri-tr’: tri-trophic food chain. The error bar indicates standard error for parameter estimate, linked to the significance of the configuration (cf. [12]).
Parameter estimates for the Baltic Sea ERGM configurations. A parameter estimate indicates the magnitude and significance of the configuration, giving the presence of other selected configurations. A positive value means driving, and a negative value inhibiting character of the configuration. ‘App c’: apparent competition, ‘Exp c’: exploitative competition, ‘Gen’: generalist, ‘HPS': highly predated species, ‘Key’: keystone species, ‘Omn’: omnivory, ‘Tri-tr’: tri-trophic food chain. Arc is a baseline propensity for the occurrence of the ties, and is not considered a driving configuration [12]. It represents a single link, and is included in the models to control for varying densities (albeit not a direct measure for network density).
| offshore 1980s | offshore 2000s | coast 1980s | coast 2000s | |
|---|---|---|---|---|
| arc | −5.1398 | −5.7522a | −11.3957a | −12.0156a |
| generalist | 1.8165a | 2.1638a | 4.0303a | 4.5274a |
| highly predated species | 0.959 | 0.7339 | 2.164a | 2.0822a |
| keystone species | 2.3523a | 2.2518a | 2.8967a | 3.6722a |
| omnivory | 0.2981 | 0.2741 | −0.1033 | −0.1157 |
| tri-trophic food chain | −0.702a | −0.617a | −0.3501a | −0.4182a |
| apparent competition | −0.1096 | −0.1099 | −0.1779a | −0.2373a |
| exploitative competition | −0.0888 |
aSignificant configurations.
Figure 3.Difference in ERGM configuration parameter estimates from the 1980s to 2000s, i.e. before to after regime shift. The configurations that are not significant (HPS, Omn and in addition App c for offshore) are marked with lighter colour. ‘App c’: apparative competition, ‘Gen’: generalist, ‘HPS': highly predated species, ‘Key’: keystone species, ‘Omn’: omnivory, ‘Tri-tr’: tri-trophic food chain.