Literature DB >> 26885640

Multiscale Modeling in the Clinic: Drug Design and Development.

Colleen E Clancy1, Gary An2, William R Cannon3, Yaling Liu4, Elebeoba E May5, Peter Ortoleva6, Aleksander S Popel7, James P Sluka8, Jing Su9, Paolo Vicini10, Xiaobo Zhou9, David M Eckmann11.   

Abstract

A wide range of length and time scales are relevant to pharmacology, especially in drug development, drug design and drug delivery. Therefore, multiscale computational modeling and simulation methods and paradigms that advance the linkage of phenomena occurring at these multiple scales have become increasingly important. Multiscale approaches present in silico opportunities to advance laboratory research to bedside clinical applications in pharmaceuticals research. This is achievable through the capability of modeling to reveal phenomena occurring across multiple spatial and temporal scales, which are not otherwise readily accessible to experimentation. The resultant models, when validated, are capable of making testable predictions to guide drug design and delivery. In this review we describe the goals, methods, and opportunities of multiscale modeling in drug design and development. We demonstrate the impact of multiple scales of modeling in this field. We indicate the common mathematical and computational techniques employed for multiscale modeling approaches used in pharmacometric and systems pharmacology models in drug development and present several examples illustrating the current state-of-the-art models for (1) excitable systems and applications in cardiac disease; (2) stem cell driven complex biosystems; (3) nanoparticle delivery, with applications to angiogenesis and cancer therapy; (4) host-pathogen interactions and their use in metabolic disorders, inflammation and sepsis; and (5) computer-aided design of nanomedical systems. We conclude with a focus on barriers to successful clinical translation of drug development, drug design and drug delivery multiscale models.

Entities:  

Keywords:  Drug delivery; Mathematical; Multiscale modeling; Pharmacology; Simulation

Mesh:

Year:  2016        PMID: 26885640      PMCID: PMC4983472          DOI: 10.1007/s10439-016-1563-0

Source DB:  PubMed          Journal:  Ann Biomed Eng        ISSN: 0090-6964            Impact factor:   3.934


  126 in total

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2.  In silico experiments of existing and hypothetical cytokine-directed clinical trials using agent-based modeling.

Authors:  Gary An
Journal:  Crit Care Med       Date:  2004-10       Impact factor: 7.598

3.  Shape effects of filaments versus spherical particles in flow and drug delivery.

Authors:  Yan Geng; Paul Dalhaimer; Shenshen Cai; Richard Tsai; Manorama Tewari; Tamara Minko; Dennis E Discher
Journal:  Nat Nanotechnol       Date:  2007-03-25       Impact factor: 39.213

4.  Cardiac electrical restitution properties and stability of reentrant spiral waves: a simulation study.

Authors:  Z Qu; J N Weiss; A Garfinkel
Journal:  Am J Physiol       Date:  1999-01

5.  Systems pharmacology for drug discovery and development: paradigm shift or flash in the pan?

Authors:  P Vicini; P H van der Graaf
Journal:  Clin Pharmacol Ther       Date:  2013-05       Impact factor: 6.875

6.  Preliminary report: effect of encainide and flecainide on mortality in a randomized trial of arrhythmia suppression after myocardial infarction.

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Journal:  N Engl J Med       Date:  1989-08-10       Impact factor: 91.245

7.  In Silico Augmentation of the Drug Development Pipeline: Examples from the study of Acute Inflammation.

Authors:  Gary An; John Bartels; Yoram Vodovotz
Journal:  Drug Dev Res       Date:  2011-03-01       Impact factor: 4.360

8.  An advanced discrete state-discrete event multiscale simulation model of the response of a solid tumor to chemotherapy: Mimicking a clinical study.

Authors:  G S Stamatakos; E A Kolokotroni; D D Dionysiou; E Ch Georgiadi; C Desmedt
Journal:  J Theor Biol       Date:  2010-05-31       Impact factor: 2.691

9.  Numerical simulation of blood and interstitial flow through a solid tumor.

Authors:  C Pozrikidis
Journal:  J Math Biol       Date:  2009-03-11       Impact factor: 2.259

Review 10.  Nanoparticle therapeutics: an emerging treatment modality for cancer.

Authors:  Mark E Davis; Zhuo Georgia Chen; Dong M Shin
Journal:  Nat Rev Drug Discov       Date:  2008-09       Impact factor: 84.694

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  20 in total

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Authors:  Kevin R DeMarco; Slava Bekker; Igor Vorobyov
Journal:  J Physiol       Date:  2018-12-19       Impact factor: 5.182

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Authors:  Zhihui Wang; Philip K Maini
Journal:  IEEE Trans Biomed Eng       Date:  2017-02-22       Impact factor: 4.538

3.  Sepsis in the era of data-driven medicine: personalizing risks, diagnoses, treatments and prognoses.

Authors:  Andrew C Liu; Krishna Patel; Ramya Dhatri Vunikili; Kipp W Johnson; Fahad Abdu; Shivani Kamath Belman; Benjamin S Glicksberg; Pratyush Tandale; Roberto Fontanez; Oommen K Mathew; Andrew Kasarskis; Priyabrata Mukherjee; Lakshminarayanan Subramanian; Joel T Dudley; Khader Shameer
Journal:  Brief Bioinform       Date:  2020-07-15       Impact factor: 11.622

Review 4.  Potassium currents in the heart: functional roles in repolarization, arrhythmia and therapeutics.

Authors:  Nipavan Chiamvimonvat; Ye Chen-Izu; Colleen E Clancy; Isabelle Deschenes; Dobromir Dobrev; Jordi Heijman; Leighton Izu; Zhilin Qu; Crystal M Ripplinger; Jamie I Vandenberg; James N Weiss; Gideon Koren; Tamas Banyasz; Eleonora Grandi; Michael C Sanguinetti; Donald M Bers; Jeanne M Nerbonne
Journal:  J Physiol       Date:  2017-01-05       Impact factor: 5.182

5.  Quantitative prediction of human pharmacokinetic responses to drugs via fluidically coupled vascularized organ chips.

Authors:  Anna Herland; Ben M Maoz; Debarun Das; Mahadevabharath R Somayaji; Rachelle Prantil-Baun; Richard Novak; Michael Cronce; Tessa Huffstater; Sauveur S F Jeanty; Miles Ingram; Angeliki Chalkiadaki; David Benson Chou; Susan Marquez; Aaron Delahanty; Sasan Jalili-Firoozinezhad; Yuka Milton; Alexandra Sontheimer-Phelps; Ben Swenor; Oren Levy; Kevin K Parker; Andrzej Przekwas; Donald E Ingber
Journal:  Nat Biomed Eng       Date:  2020-01-27       Impact factor: 25.671

Review 6.  Omics-Based Strategies in Precision Medicine: Toward a Paradigm Shift in Inborn Errors of Metabolism Investigations.

Authors:  Abdellah Tebani; Carlos Afonso; Stéphane Marret; Soumeya Bekri
Journal:  Int J Mol Sci       Date:  2016-09-14       Impact factor: 5.923

Review 7.  Targeting Phospholipid Metabolism in Cancer.

Authors:  Menglin Cheng; Zaver M Bhujwalla; Kristine Glunde
Journal:  Front Oncol       Date:  2016-12-27       Impact factor: 6.244

8.  Rabbit-specific computational modelling of ventricular cell electrophysiology: Using populations of models to explore variability in the response to ischemia.

Authors:  Philip Gemmell; Kevin Burrage; Blanca Rodríguez; T Alexander Quinn
Journal:  Prog Biophys Mol Biol       Date:  2016-06-16       Impact factor: 3.667

9.  Computational analysis of the mesenchymal signature landscape in gliomas.

Authors:  Orieta Celiku; Anita Tandle; Joon-Yong Chung; Stephen M Hewitt; Kevin Camphausen; Uma Shankavaram
Journal:  BMC Med Genomics       Date:  2017-03-09       Impact factor: 3.063

10.  Digging into Lipid Membrane Permeation for Cardiac Ion Channel Blocker d-Sotalol with All-Atom Simulations.

Authors:  Kevin R DeMarco; Slava Bekker; Colleen E Clancy; Sergei Y Noskov; Igor Vorobyov
Journal:  Front Pharmacol       Date:  2018-02-01       Impact factor: 5.810

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