Literature DB >> 26883821

Reinterpreting Long-Term Evolution Experiments: Is Delayed Adaptation an Example of Historical Contingency or a Consequence of Intermittent Selection?

John R Roth1, Sophie Maisnier-Patin2.   

Abstract

Van Hofwegen et al. demonstrated that Escherichia coli rapidly evolves the ability to use citrate when long selective periods are provided (D. J. Van Hofwegen, C. J. Hovde, and S. A. Minnich, J Bacteriol 198:1022-1034, 2016, http://dx.doi.org/10.1128/JB.00831-15). This contrasts with the extreme delay (15 years of daily transfers) seen in the long-term evolution experiments of Lenski and coworkers. Their idea of "historical contingency" may require reinterpretation. Rapid evolution seems to involve selection for duplications of the whole cit locus that are too unstable to contribute when selection is provided in short pulses.
Copyright © 2016, American Society for Microbiology. All Rights Reserved.

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Year:  2016        PMID: 26883821      PMCID: PMC4800865          DOI: 10.1128/JB.00110-16

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  17 in total

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Authors:  Ulfar Bergthorsson; Dan I Andersson; John R Roth
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-17       Impact factor: 11.205

2.  Duplication frequency in a population of Salmonella enterica rapidly approaches steady state with or without recombination.

Authors:  Andrew B Reams; Eric Kofoid; Michael Savageau; John R Roth
Journal:  Genetics       Date:  2010-01-18       Impact factor: 4.562

3.  The tandem inversion duplication in Salmonella enterica: selection drives unstable precursors to final mutation types.

Authors:  Elisabeth Kugelberg; Eric Kofoid; Dan I Andersson; Yong Lu; Joseph Mellor; Frederick P Roth; John R Roth
Journal:  Genetics       Date:  2010-03-09       Impact factor: 4.562

4.  Anaerobic regulation of citrate fermentation by CitAB in Escherichia coli.

Authors:  Kaneyoshi Yamamoto; Fumika Matsumoto; Taku Oshima; Nobuyuki Fujita; Naotake Ogasawara; Akira Ishihama
Journal:  Biosci Biotechnol Biochem       Date:  2008-11-07       Impact factor: 2.043

5.  Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli.

Authors:  Zachary D Blount; Christina Z Borland; Richard E Lenski
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-04       Impact factor: 11.205

6.  Molecular Basis for Bacterial Growth on Citrate or Malonate.

Authors:  Peter Dimroth
Journal:  EcoSal Plus       Date:  2004-12

7.  Real-time evolution of new genes by innovation, amplification, and divergence.

Authors:  Joakim Näsvall; Lei Sun; John R Roth; Dan I Andersson
Journal:  Science       Date:  2012-10-19       Impact factor: 47.728

8.  Rapid Evolution of Citrate Utilization by Escherichia coli by Direct Selection Requires citT and dctA.

Authors:  Dustin J Van Hofwegen; Carolyn J Hovde; Scott A Minnich
Journal:  J Bacteriol       Date:  2016-02-01       Impact factor: 3.490

9.  Genomic analysis of a key innovation in an experimental Escherichia coli population.

Authors:  Zachary D Blount; Jeffrey E Barrick; Carla J Davidson; Richard E Lenski
Journal:  Nature       Date:  2012-09-19       Impact factor: 49.962

10.  Fine-tuning citrate synthase flux potentiates and refines metabolic innovation in the Lenski evolution experiment.

Authors:  Erik M Quandt; Jimmy Gollihar; Zachary D Blount; Andrew D Ellington; George Georgiou; Jeffrey E Barrick
Journal:  Elife       Date:  2015-10-14       Impact factor: 8.140

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  2 in total

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Authors:  Melissa Tumen-Velasquez; Christopher W Johnson; Alaa Ahmed; Graham Dominick; Emily M Fulk; Payal Khanna; Sarah A Lee; Alicia L Schmidt; Jeffrey G Linger; Mark A Eiteman; Gregg T Beckham; Ellen L Neidle
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-18       Impact factor: 11.205

2.  Innovation in an E. coli evolution experiment is contingent on maintaining adaptive potential until competition subsides.

Authors:  Dacia Leon; Simon D'Alton; Erik M Quandt; Jeffrey E Barrick
Journal:  PLoS Genet       Date:  2018-04-12       Impact factor: 5.917

  2 in total

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