| Literature DB >> 26881045 |
Chia-Ter Chao1, Yen-Ching Chen2, Chih-Kang Chiang3, Jenq-Wen Huang4, Cheng-Chung Fang5, Chen-Chih Chang4, Chung-Jen Yen6.
Abstract
Background. Single nucleotide polymorphisms (SNPs) of antioxidants, including superoxide dismutase 2 (SOD2) and glutathione peroxidase 1 (GPX1), play an important role in the risk for cancer and metabolic disorders. However, little is known regarding the effect of antioxidant SNPs on renal events. Methods. We prospectively enrolled multicenter patients with end-stage renal disease (ESRD) and those without chronic kidney disease (CKD) of Han Chinese origin, with SOD2 (Val16Ala), GPX1 (Pro197Leu), and PPAR-γ (Pro12Ala, C161T) genotyped. Multiple regression analyses were conducted to evaluate the significant risk determinants for ESRD. Results. Compared to ESRD patients, non-CKD subjects were more likely to have T allele at SOD2 Val16Ala (p = 0.036) and CC genotype at PPAR-γ Pro12Ala (p = 0.028). Regression analysis showed that TT genotype of SOD2 Val16Ala conferred significantly lower ESRD risk among patients without diabetes (odds ratio 0.699; p = 0.018). GPX1 SNP alone did not alter the risk. We detected significant interactions between SNPs including PPAR-γ Pro12Ala, C161T, and GPX1 regarding the risk of ESRD. Conclusion. This is the first and largest study on the association between adverse renal outcomes and antioxidant SNPs among Han Chinese population. Determination of SOD2 and PPAR-γ SNPs status might assist in ESRD risk estimation.Entities:
Mesh:
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Year: 2016 PMID: 26881045 PMCID: PMC4736813 DOI: 10.1155/2016/8516748
Source DB: PubMed Journal: Oxid Med Cell Longev ISSN: 1942-0994 Impact factor: 6.543
Primers and restriction enzymes for PCR-RFLP.
| Gene/SNP | Primers for PCR | Restriction enzyme | Size of digestion products (base pairs) |
|---|---|---|---|
| SOD2/V16A | 5′-CTGACCGGGCTGTGCTTTCT-3′ | BsaWI | TT: ~50, 175 |
| 5′-CAACGCCTCCTGGTACTTCT-3′ | CT: ~50, 175, 225 | ||
| CC: ~225 | |||
|
| |||
| GPX1/P197L | 5′-GCTTCCAGACCATTGACATC-3′ | ApaI | CC: ~53, 261 |
| 5′-TCCCAAATGACAATGACACAG-3′ | CT: ~53, 261, 314 | ||
| TT: ~314 | |||
|
| |||
| PPAR- | 5′-GCCAATTCAAGCCCAGTC-3′ | BstUI | CC: ~270 |
| 5′-GATATGTTTGCAGACAGTGTATC | CG: ~43, 227, 270 | ||
| AGTGAAGGAATCGCTTTCCG-3′ | GG: ~43, 227 | ||
|
| |||
| PPAR- | 5′-TTTGACTGAACCCCCTGTTG-3′ | NlaIII | CC: ~101, 245 |
| 5′-CAGAATAGTGCAACTGGAAGA-3′ | CT: ~41, 101, 204, 245 | ||
| TT: ~41, 101, 204 | |||
Characteristics of patients with ESRD and those without CKD.
| Variables | Non-CKD | ESRD patients |
|
|---|---|---|---|
| Number of subjects | 780 | 671 | |
| Age (years) | 60.0 ± 19.2 | 58.9 ± 14.6 | <0.001 |
| Male | 410 (52.6%) | 327 (48.7%) | 0.155 |
| DM | 83 (10.6%) | 253 (37.7%) | <0.001 |
| Serum creatinine (mg/dL) | 1.0 ± 0.3 | 11.2 ± 2.5 | <0.001 |
| SOD2 exon 2 genotype | 0.036 | ||
| TT | 576 (73.85%) | 455 (67.8%) | |
| CT | 190 (24.36%) | 199 (29.66%) | |
| CC | 14 (1.79%) | 17 (2.53%) | |
| GPX1 exon 2 genotype | 1.000 | ||
| CC | 697 (89.36%) | 600 (89.42%) | |
| CT | 82 (10.51%) | 71 (10.58%) | |
| TT | 1 (0.13%) | 0 (0.00%) | |
| PPAR- | 0.028 | ||
| CC | 733 (93.90%) | 609 (90.99%) | |
| CG | 46 (5.97%) | 57 (8.30%) | |
| GG | 1 (0.13%) | 5 (0.72%) | |
| PPAR- | 0.382 | ||
| CC | 449 (57.69%) | 366 (55.08%) | |
| CT | 283 (36.21%) | 254 (37.63%) | |
| TT | 48 (6.10%) | 51 (7.30%) |
Continuous variables were tested by Kruskal-Wallis test, whereas categorical variables were tested by Fisher's exact test.
Comparisons of the minor allele frequencies of the four SNPs and examinations of the Hardy-Weinberg equilibrium among the entire cohort.
| SNPs | rs # | Nucleotide Change (amino acid change) | Location | Controls ( | Cases ( | ||
|---|---|---|---|---|---|---|---|
| MAF | HWE | MAF | HWE | ||||
| SOD2 | rs4880 | T → C | exon 2 | 13.97% | 0.768 | 17.36% | 0.423 |
| GPX1 | rs1050450 | C → T | exon 2 | 5.38% | 0.720 | 5.29% | 0.249 |
| P12A | rs1801282 | C → G | exon B | 3.08% | 0.526 | 4.99% | 0.020 |
| C161T | rs3856806 | C → T | exon 6 | 24.29% | 0.697 | 26.53% | 0.488 |
HWE = Hardy-Weinberg equilibrium.
MAF = minor allele frequency.
Characteristics of ESRD patients due to DMN and non-DMN related ESRD.
| Variables | Non-DMN-related ESRD patients | DMN-related ESRD patients |
|
|---|---|---|---|
| Number of subjects | 492 | 179 | |
| SOD2 exon 2 genotype | 0.716 | ||
| TT | 330 (67.1%) | 125 (69.8%) | |
| CT | 150 (30.5%) | 49 (27.4%) | |
| CC | 12 (2.4%) | 5 (2.8%) | |
| GPX1 exon 2 genotype | 0.258 | ||
| CC | 444 (90.2%) | 156 (87.2%) | |
| TC | 48 (9.8%) | 23 (12.8%) | |
| TT | 0 (0.00%) | 0 (0.00%) | |
| PPAR- | 0.284 | ||
| CC | 451 (91.7%) | 158 (88.3%) | |
| CG | 37 (7.5%) | 20 (11.2%) | |
| GG | 4 (0.8%) | 1 (0.6%) | |
| PPAR- | 0.454 | ||
| CC | 263 (53.5%) | 103 (57.5%) | |
| CT | 193 (39.2%) | 61 (34.1%) | |
| TT | 36 (7.3%) | 51 (8.4%) |
Continuous variables were tested by Kruskal-Wallis test, whereas categorical variables were tested by Fisher's exact test.
Multivariate analysis of the predictors of dialysis by fitting multiple logistic regression model with the stepwise variable selection method, including SOD2 and GPX1 polymorphisms#.
| Covariates | Regression coefficient | Standard error |
|
| Odds ratio | 95% confidence interval | |
|---|---|---|---|---|---|---|---|
| Intercept | −0.780 | 0.150 | −5.194 | <0.001 | — | — | — |
|
| |||||||
| Age (between 28 and 65) | 1.578 | 0.124 | 12.724 | <0.001 | 4.847 | 3.801 | 6.180 |
| Male | −0.252 | 0.123 | −2.056 | 0.040 | 0.777 | 0.611 | 0.988 |
| DM | 1.757 | 0.185 | 9.520 | <0.001 | 5.792 | 4.035 | 8.316 |
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| |||||||
| Non-DM × SOD2 exon 2 TT | −0.358 | 0.151 | −2.378 | 0.018 | 0.699 | 0.520 | 0.939 |
Multiple logistic regression model: n = 1451, adjusted generalized R 2 = 0.296, estimated area under the receiver operating characteristic (ROC) curve = 0.762, and the Hosmer and Lemeshow goodness-of-fit chi-square test p = 0.003 (df = 8).
#Variables with odds ratio (OR) of extreme values were listed below: DM × SOD2 exon 2 CC, OR 3.6 × 105 (p < 0.001).
Multivariate analysis of the predictors of dialysis by fitting multiple logistic regression model with the stepwise variable selection method, including SOD2, GPX1, and PPAR-γ polymorphisms#.
| Covariates | Regression coefficient | Standard error |
|
| Odds ratio | 95% confidence interval | |
|---|---|---|---|---|---|---|---|
| Intercept | −0.655 | 0.162 | −4.038 | <0.001 | — | — | — |
|
| |||||||
| Age (between 28 and 65) | 1.585 | 0.125 | 12.689 | <0.001 | 4.879 | 3.820 | 6.232 |
| Male | −0.240 | 0.123 | −1.953 | 0.051 | 0.786 | 0.618 | 1.001 |
| DM | 1.785 | 0.186 | 9.617 | <0.001 | 5.957 | 4.141 | 8.569 |
|
| |||||||
| Non-DM × SOD2 exon 2 TT | −0.370 | 0.151 | −2.452 | 0.014 | 0.691 | 0.514 | 0.928 |
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| |||||||
| PPAR- | −0.254 | 0.123 | −2.059 | 0.040 | 0.778 | 0.609 | 0.988 |
Multiple logistic regression model: n = 1451, adjusted generalized R 2 = 0.304, estimated area under the receiver operating characteristic (ROC) curve = 0.769, and the Hosmer and Lemeshow goodness-of-fit chi-square test p = 0.0047 (df = 8).
#Variables with odds ratio (OR) of extreme values were listed below: DM × SOD2 exon 2 CC, OR 2.7 × 106 (p < 0.001); non-DM × PPAR-γ exon B GG, OR 3.8 × 1013 (p < 0.001); PPAR-γ exon 6 TT × PPAR-γ exon B GG, OR 8.2 × 1011 (p < 0.001); GPX1 exon 2 CC × PPAR-γ exon B GG, OR 1.9 × 10−7 (p < 0.001).