| Literature DB >> 26876567 |
Yuan Tian1, Tangpeng Xu2,3, Jia Huang2,4, Limin Zhang1, Shan Xu1, Bin Xiong2, Yulan Wang1,5, Huiru Tang1,6.
Abstract
Colorectal cancer (CRC) is one of the leading causes of cancer-related death worldwide and prognosis based on the conventional histological grading method for CRC remains poor. To better the situation, we analyzed the metabonomic signatures of 50 human CRC tissues and their adjacent non-involved tissues (ANIT) using high-resolution magic-angle spinning (HRMAS) (1)H NMR spectroscopy together with the fatty acid compositions of these tissues using GC-FID/MS. We showed that tissue metabolic phenotypes not only discriminated CRC tissues from ANIT, but also distinguished low-grade tumor tissues (stages I-II) from the high-grade ones (stages III-IV) with high sensitivity and specificity in both cases. Metabonomic phenotypes of CRC tissues differed significantly from that of ANIT in energy metabolism, membrane biosynthesis and degradations, osmotic regulations together with the metabolism of proteins and nucleotides. Amongst all CRC tissues, the stage I tumors exhibited largest differentiations from ANIT. The combination of the differentiating metabolites showed outstanding collective power for differentiating cancer from ANIT and for distinguishing CRC tissues at different stages. These findings revealed details in the typical metabonomic phenotypes associated with CRC tissues nondestructively and demonstrated tissue metabonomic phenotyping as an important molecular pathology tool for diagnosis and prognosis of cancerous solid tumors.Entities:
Mesh:
Substances:
Year: 2016 PMID: 26876567 PMCID: PMC4753490 DOI: 10.1038/srep20790
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1Average 600 MHz 1H HRMAS NMR spectra of ANIT (A), stage I CRC tumor (B) and stage IV CRC tumor (C). The region of δ 5.7–8.5 was vertically expanded 16 times compared with δ 0.8–4.2. Metabolite keys: 1, isoleucine; 2, leucine; 3, valine; 4, lactate; 5, threonine; 6, alanine; 7, lysine; 8, arginine; 9, proline; 10, glutamate; 11, methionine; 12, glutamine; 13, creatine; 14, choline; 15, glycine; 16, tyrosine; 17, phenylalanine; 18, scyllo-inositol; 19, lipid; 20, aspartate; 21, asparagine; 22, glutathione; 23, cysteine; 24, phosphorylcholine/glycerophosphocholine; 25, taurine; 26, myo-inositol; 27, phosphoethanolamine; 28, uracil; 29, cytosine; 30, isocytosine; 31, acetate; 32, fumarate; 33, inosine; 34, formate.
Figure 2PCA scores plots obtained from NMR data of CRC tumor tissues at different stages (I–IV) with (A) or without (B) ANIT. ANIT (), stage I (), stage II (), stage III (), and stage IV ().
Figure 3ROC curves determined using the cross-validated predicted Y-values of the 1H NMR OPLS-DA models from CRC tumor and ANIT.
(A) ANIT vs CRC tumor, (B) stages I-II tumor vs stages III-IV tumor, (C) stage I tumor vs ANIT, (D) stage II tumor vs ANIT.
Figure 4OPLS-DA scores (left) and coefficient-coded loadings plots (right) showing the discrimination between (A) ANIT () and CRC tumor () (n = 50, |r| > 0.29) and (B) stages I-II tumor () and stages III–IV tumor () (n = 22, |r| > 0.41). Metabolite keys are given in Fig. 1 and Table S1.
Correlation Coefficients for Metabolites having significantly differences between CRC tumors and ANIT, and between stages III-IV and stages I-II tumors.
| Metabolite (no.) | CRC | stages III-IV |
|---|---|---|
| Lipid (19) | −0.62 | 0.62 |
| Lactate (4) | 0.58 | — |
| Leucine (2) | 0.44 | — |
| Valine (3) | 0.41 | — |
| Isoleucine (1) | 0.39 | — |
| Alanine (6) | 0.32 | — |
| Glutamine (12) | 0.32 | −0.50 |
| Glutamate (10) | 0.89 | −0.65 |
| Aspartate (20) | 0.54 | −0.55 |
| Aspargine (21) | 0.51 | −0.80 |
| Cysteine (23) | 0.49 | −0.53 |
| Glycine (15) | 0.60 | −0.47 |
| Tyrosine (16) | 0.46 | — |
| Phenylalanine (17) | 0.43 | — |
| Choline (14) | 0.37 | −0.46 |
| PC/GPC (24) | 0.37 | −0.50 |
| PE (27) | 0.76 | −0.65 |
| 0.61 | — | |
| GSH (22) | 0.54 | −0.75 |
| Taurine (25) | 0.79 | −0.67 |
| Uracil (28) | 0.61 | −0.75 |
| Cytosine (29) | 0.62 | — |
| Isocytosine (30) | 0.76 | −0.63 |
| Inosine (33) | 0.60 | −0.62 |
The coefficients were from OPLS-DA results; positive and negative signs indicate positive and negative correlations, respectively.
Figure 5The ratios of metabolite changes for CRC tumor tissues at different stages (I-IV) against ANIT.
Figure 6Fatty acid levels in ANIT and CRC tumor tissues.
*p < 0.05 when compared to the ANIT, Δ p < 0.05 when compared to low-grade (stages I-II) tumor tissues.
Clinical information of CRC patients.
| patients for HRMAS NMR | patients for GC-MS | |
|---|---|---|
| Number | 50 | 16 |
| Age (median, range) | 56, 42–70 | 58, 45–64 |
| Male/female ratio | 30/20 | 11/5 |
| Stage I | 16 | 6 |
| Stage II | 12 | 4 |
| Stage III | 17 | 3 |
| Stage IV | 5 | 3 |
| colon cancer | 16 | 6 |
| rectal cancer | 34 | 10 |