Literature DB >> 26874965

Impact and insights from ancient repetitive elements in plant genomes.

Florian Maumus1, Hadi Quesneville2.   

Abstract

Transposable elements and other repeated sequences are predominant contributors to most plant genomes. The vast majority of repeated elements accumulate mutations to the extent of becoming anonymous sequences, also known as 'genomic dark matter' which is also thought to contribute significantly to the composition of plant genomes. This review aims to highlight recent methods and analyses suggesting that ancient repeats have profound effects on plant genome biology.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID： 26874965     DOI： 10.1016/j.pbi.2016.01.003

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN： 1369-5266            Impact factor:   7.834


  12 in total

Review 1.  Heterogeneous transposable elements as silencers, enhancers and targets of meiotic recombination.

Authors:  Charles J Underwood; Kyuha Choi
Journal:  Chromosoma       Date:  2019-07-23       Impact factor: 4.316

2.  Large vs small genomes in Passiflora: the influence of the mobilome and the satellitome.

Authors:  Mariela Sader; Magdalena Vaio; Luiz Augusto Cauz-Santos; Marcelo Carnier Dornelas; Maria Lucia Carneiro Vieira; Natoniel Melo; Andrea Pedrosa-Harand
Journal:  Planta       Date:  2021-04-01       Impact factor: 4.116

Review 3.  Epigenetic targeting of transposon relics: beating the dead horses of the genome?

Authors:  Iris Sammarco; Janto Pieters; Susnata Salony; Izabela Toman; Grygoriy Zolotarov; Clément Lafon Placette
Journal:  Epigenetics       Date:  2022-01-04       Impact factor: 4.861

4.  Assembly of the non-heading pak choi genome and comparison with the genomes of heading Chinese cabbage and the oilseed yellow sarson.

Authors:  Peirong Li; Tongbing Su; Xiuyun Zhao; Weihong Wang; Deshuang Zhang; Yangjun Yu; Philipp E Bayer; David Edwards; Shuancang Yu; Fenglan Zhang
Journal:  Plant Biotechnol J       Date:  2021-01-03       Impact factor: 9.803

5.  A chromosome-scale genome assembly of cucumber (Cucumis sativus L.).

Authors:  Qing Li; Hongbo Li; Wu Huang; Yuanchao Xu; Qian Zhou; Shenhao Wang; Jue Ruan; Sanwen Huang; Zhonghua Zhang
Journal:  Gigascience       Date:  2019-06-01       Impact factor: 6.524

6.  Differential retention of transposable element-derived sequences in outcrossing Arabidopsis genomes.

Authors:  Sylvain Legrand; Thibault Caron; Florian Maumus; Sol Schvartzman; Leandro Quadrana; Eléonore Durand; Sophie Gallina; Maxime Pauwels; Clément Mazoyer; Lucie Huyghe; Vincent Colot; Marc Hanikenne; Vincent Castric
Journal:  Mob DNA       Date:  2019-07-17

7.  Genome Size Evolution Mediated by Gypsy Retrotransposons in Brassicaceae.

Authors:  Shi-Jian Zhang; Lei Liu; Ruolin Yang; Xiangfeng Wang
Journal:  Genomics Proteomics Bioinformatics       Date:  2020-10-31       Impact factor: 7.691

8.  Finding and extending ancient simple sequence repeat-derived regions in the human genome.

Authors:  Jonathan A Shortt; Robert P Ruggiero; Corey Cox; Aaron C Wacholder; David D Pollock
Journal:  Mob DNA       Date:  2020-02-17

9.  Repetitive DNA landscape in essential A and supernumerary B chromosomes of Festuca pratensis Huds.

Authors:  Rahman Ebrahimzadegan; Andreas Houben; Ghader Mirzaghaderi
Journal:  Sci Rep       Date:  2019-12-27       Impact factor: 4.379

10.  Comparative Repeat Profiling of Two Closely Related Conifers (Larix decidua and Larix kaempferi) Reveals High Genome Similarity With Only Few Fast-Evolving Satellite DNAs.

Authors:  Tony Heitkam; Luise Schulte; Beatrice Weber; Susan Liedtke; Sarah Breitenbach; Anja Kögler; Kristin Morgenstern; Marie Brückner; Ute Tröber; Heino Wolf; Doris Krabel; Thomas Schmidt
Journal:  Front Genet       Date:  2021-07-12       Impact factor: 4.599
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