Literature DB >> 26874228

Experimental measurements and mathematical modeling of biological noise arising from transcriptional and translational regulation of basic synthetic gene circuits.

Lucia Bandiera1, Alice Pasini2, Lorenzo Pasotti3, Susanna Zucca3, Giuliano Mazzini4, Paolo Magni3, Emanuele Giordano5, Simone Furini6.   

Abstract

The small number of molecules, unevenly distributed within an isogenic cell population, makes gene expression a noisy process, and strategies have evolved to deal with this variability in protein concentration and to limit its impact on cellular behaviors. As translational efficiency has a major impact on biological noise, a possible strategy to control noise is to regulate gene expression processes at the post-transcriptional level. In this study, fluctuations in the concentration of a green fluorescent protein were compared, at the single cell level, upon transformation of an isogenic bacterial cell population with synthetic gene circuits implementing either a transcriptional or a post-transcriptional control of gene expression. Experimental measurements showed that protein variability is lower under post-transcriptional control, when the same average protein concentrations are compared. This effect is well reproduced by stochastic simulations, supporting the hypothesis that noise reduction is due to the control mechanism acting on the efficiency of translation. Similar strategies are likely to play a role in noise reduction in natural systems and to be useful for controlling noise in synthetic biology applications.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Gene-expression noise; Post-transcriptional regulation; Stochastic simulations; Synthetic biology

Mesh:

Substances:

Year:  2016        PMID: 26874228     DOI: 10.1016/j.jtbi.2016.02.004

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  5 in total

1.  Gene expression noise is affected differentially by feedback in burst frequency and burst size.

Authors:  Pavol Bokes; Abhyudai Singh
Journal:  J Math Biol       Date:  2016-09-24       Impact factor: 2.259

2.  Non-destructive monitoring of 3D cell cultures: new technologies and applications.

Authors:  Marilisa Cortesi; Emanuele Giordano
Journal:  PeerJ       Date:  2022-05-12       Impact factor: 3.061

3.  Reliable measurement of E. coli single cell fluorescence distribution using a standard microscope set-up.

Authors:  Marilisa Cortesi; Lucia Bandiera; Alice Pasini; Alessandro Bevilacqua; Alessandro Gherardi; Simone Furini; Emanuele Giordano
Journal:  J Biol Eng       Date:  2017-02-20       Impact factor: 4.355

4.  CRISPR Interference Modules as Low-Burden Logic Inverters in Synthetic Circuits.

Authors:  Massimo Bellato; Angelica Frusteri Chiacchiera; Elia Salibi; Michela Casanova; Davide De Marchi; Ignazio Castagliuolo; Maria Gabriella Cusella De Angelis; Paolo Magni; Lorenzo Pasotti
Journal:  Front Bioeng Biotechnol       Date:  2022-01-28

Review 5.  Phenotypic Variability in Synthetic Biology Applications: Dealing with Noise in Microbial Gene Expression.

Authors:  Lucia Bandiera; Simone Furini; Emanuele Giordano
Journal:  Front Microbiol       Date:  2016-04-08       Impact factor: 5.640

  5 in total

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