Literature DB >> 26873246

Novel RIPK3 inhibitors discovered through a structure-based approach exert post-ischemic neuroprotection.

S M Fayaz1,2, V S Suvanish Kumar1, Charles K Davis1, G K Rajanikant3.   

Abstract

Necroptosis or programmed necrosis is evident in various neurological disorders such as ischemic stroke. Receptor interacting serine/threonine protein kinase 3 (RIPK3) is one of the crucial targets of necroptosis and inhibition of this protein exerts neuroprotection. However, knowledge regarding the three-dimensional structure and binding site information of this protein is lacking. In the present study, structure-based in silico methods were implemented to identify the key amino acids in the RIPK3 binding site that might be responsible for ligand interactions. Further, novel RIPK3 inhibitors were identified through a dual ensemble screening strategy. Three inhibitors exhibited binding to RIPK3 in micromolar concentrations and exerted post-ischemic neuroprotection in vitro.

Entities:  

Keywords:  Dual ensemble screening (DES); Ischemic stroke; Necroptosis; Post-ischemic neuroprotection

Mesh:

Substances:

Year:  2016        PMID: 26873246     DOI: 10.1007/s11030-016-9663-1

Source DB:  PubMed          Journal:  Mol Divers        ISSN: 1381-1991            Impact factor:   2.943


  21 in total

1.  Glide: a new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy.

Authors:  Richard A Friesner; Jay L Banks; Robert B Murphy; Thomas A Halgren; Jasna J Klicic; Daniel T Mainz; Matthew P Repasky; Eric H Knoll; Mee Shelley; Jason K Perry; David E Shaw; Perry Francis; Peter S Shenkin
Journal:  J Med Chem       Date:  2004-03-25       Impact factor: 7.446

2.  ZINC--a free database of commercially available compounds for virtual screening.

Authors:  John J Irwin; Brian K Shoichet
Journal:  J Chem Inf Model       Date:  2005 Jan-Feb       Impact factor: 4.956

3.  Novel method for generating structure-based pharmacophores using energetic analysis.

Authors:  Noeris K Salam; Roberto Nuti; Woody Sherman
Journal:  J Chem Inf Model       Date:  2009-10       Impact factor: 4.956

4.  Fas triggers an alternative, caspase-8-independent cell death pathway using the kinase RIP as effector molecule.

Authors:  N Holler; R Zaru; O Micheau; M Thome; A Attinger; S Valitutti; J L Bodmer; P Schneider; B Seed; J Tschopp
Journal:  Nat Immunol       Date:  2000-12       Impact factor: 25.606

5.  Distinct roles of RIP1-RIP3 hetero- and RIP3-RIP3 homo-interaction in mediating necroptosis.

Authors:  X-N Wu; Z-H Yang; X-K Wang; Y Zhang; H Wan; Y Song; X Chen; J Shao; J Han
Journal:  Cell Death Differ       Date:  2014-06-06       Impact factor: 15.828

6.  Tumor necrosis factor-induced nonapoptotic cell death requires receptor-interacting protein-mediated cellular reactive oxygen species accumulation.

Authors:  Yong Lin; Swati Choksi; Han-Ming Shen; Qing-Feng Yang; Gang Min Hur; You Sun Kim; Jamie Hong Tran; Sergei A Nedospasov; Zheng-gang Liu
Journal:  J Biol Chem       Date:  2003-12-29       Impact factor: 5.157

7.  A role for tumor necrosis factor receptor-2 and receptor-interacting protein in programmed necrosis and antiviral responses.

Authors:  Francis Ka-Ming Chan; Joanna Shisler; Jacqueline G Bixby; Martin Felices; Lixin Zheng; Michael Appel; Jan Orenstein; Bernard Moss; Michael J Lenardo
Journal:  J Biol Chem       Date:  2003-10-07       Impact factor: 5.157

8.  Mechanisms of necroptosis in T cells.

Authors:  Irene L Ch'en; Jennifer S Tsau; Jeffery D Molkentin; Masaaki Komatsu; Stephen M Hedrick
Journal:  J Exp Med       Date:  2011-03-14       Impact factor: 14.307

9.  TNF-induced necroptosis in L929 cells is tightly regulated by multiple TNFR1 complex I and II members.

Authors:  N Vanlangenakker; M J M Bertrand; P Bogaert; P Vandenabeele; T Vanden Berghe
Journal:  Cell Death Dis       Date:  2011-11-17       Impact factor: 8.469

10.  RIP3 mediates the embryonic lethality of caspase-8-deficient mice.

Authors:  William J Kaiser; Jason W Upton; Alyssa B Long; Devon Livingston-Rosanoff; Lisa P Daley-Bauer; Razqallah Hakem; Tamara Caspary; Edward S Mocarski
Journal:  Nature       Date:  2011-03-02       Impact factor: 49.962

View more
  4 in total

Review 1.  Ischemia/Reperfusion.

Authors:  Theodore Kalogeris; Christopher P Baines; Maike Krenz; Ronald J Korthuis
Journal:  Compr Physiol       Date:  2016-12-06       Impact factor: 9.090

2.  Amikacin Inhibits miR-497 Maturation and Exerts Post-ischemic Neuroprotection.

Authors:  S Sinoy; S M Fayaz; K D Charles; V K Suvanish; Josef P Kapfhammer; G K Rajanikant
Journal:  Mol Neurobiol       Date:  2016-05-21       Impact factor: 5.590

3.  Dabrafenib, an inhibitor of RIP3 kinase-dependent necroptosis, reduces ischemic brain injury.

Authors:  Shelly A Cruz; Zhaohong Qin; Alexandre F R Stewart; Hsiao-Huei Chen
Journal:  Neural Regen Res       Date:  2018-02       Impact factor: 5.135

4.  Is Receptor-Interacting Protein Kinase 3 a Viable Therapeutic Target for Mycobacterium tuberculosis Infection?

Authors:  Michael D Stutz; Samar Ojaimi; Gregor Ebert; Marc Pellegrini
Journal:  Front Immunol       Date:  2018-05-28       Impact factor: 7.561

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.